CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11958	Canola	cytosol	78.8	98.84
Bra028946.1-P	Field mustard	cytosol	63.13	97.86
AT5G56150.1	Thale cress	cytosol, nucleus, peroxisome	63.59	93.24
CDY51965	Canola	cytosol	63.13	92.57
CDY17396	Canola	cytosol	63.13	92.57
CDX76970	Canola	cytosol	62.67	91.89
CDY34409	Canola	cytosol	61.75	90.54
CDY25571	Canola	cytosol	61.75	90.54
CDY49174	Canola	cytosol	61.29	89.86
CDY47067	Canola	cytosol	61.29	89.86
CDX96210	Canola	cytosol	61.29	89.86
CDY14388	Canola	cytosol	60.83	89.19
CDY35636	Canola	cytosol	60.83	89.19
CDY68877	Canola	cytosol, mitochondrion	65.44	88.75
CDY06521	Canola	cytosol, plastid	65.44	88.75
CDY02238	Canola	cytosol	56.22	82.43
CDX89747	Canola	cytosol	55.76	81.76
CDX71304	Canola	cytosol, mitochondrion, nucleus	55.3	81.08
CDY31408	Canola	cytosol	54.84	80.41
CDY39254	Canola	cytosol	41.94	78.45
CDY08368	Canola	cytosol	55.3	75.47
CDY54342	Canola	cytosol	61.29	72.28
CDY38184	Canola	cytosol	54.84	66.11
CDY06520	Canola	cytosol	41.01	57.42
CDY37098	Canola	cytosol	29.03	56.76
CDX73346	Canola	cytosol	29.03	56.76
CDY23674	Canola	cytosol	29.03	56.76
CDY40025	Canola	cytosol	33.18	47.06
CDY35126	Canola	cytosol	32.72	46.41
CDX81788	Canola	cytosol	32.72	46.41
CDX83936	Canola	cytosol	32.26	45.75
CDX96802	Canola	cytosol	32.26	45.75
CDY54372	Canola	cytosol	32.26	45.75
CDY65274	Canola	cytosol	30.41	45.21
CDX87428	Canola	cytosol	31.8	45.1
CDX88485	Canola	cytosol	31.8	45.1
CDY26882	Canola	cytosol	29.95	44.83
CDY14587	Canola	cytosol	31.8	44.81
CDY57941	Canola	cytosol	31.8	44.52
CDY39315	Canola	mitochondrion	28.57	40.79
CDY30726	Canola	mitochondrion, nucleus	28.11	40.67
CDY66232	Canola	mitochondrion, nucleus	28.11	40.67
CDX79272	Canola	cytosol	31.8	40.59
CDY38761	Canola	mitochondrion	28.11	40.13
CDY11654	Canola	mitochondrion	28.11	40.13
CDY23617	Canola	plastid	33.18	39.34
CDY59253	Canola	mitochondrion	33.18	39.34
CDY03040	Canola	mitochondrion, nucleus	24.88	38.3
CDX84034	Canola	nucleus	17.97	36.45
CDY68969	Canola	mitochondrion	23.04	34.48
CDX73344	Canola	cytosol	24.88	32.93
CDX96859	Canola	mitochondrion	26.27	30.16

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:A0A078HIW3	UniProt:A0A078HIW3	EnsemblPlants:CDY36778	ProteinID:CDY36778
ProteinID:CDY36778.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00062609001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF117	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI0004EF19BA	:

Description

BnaA03g11080DBnaA03g11080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIW3]

Coordinates

chrLK032383:+:223746..225729

Molecular Weight (calculated)

24504.6 Da

IEP (calculated)

8.047

GRAVY (calculated)

-0.218

Length

217 amino acids

Sequence
(BLAST)

001: MLRINNLLRF PEDQIKTLRK ISPLSICFLS ESSCVDPCAC SADAQFLFKI PESLDDLPLV WIKQRVQFKM ASKRINKELR DLQRDPPVSC SAGPVGDDMF
101: HWQATIMGPT DSPFSGGVFL VSIHFPPDYP FKPPKVSFRT KVYHPNVNSN GSICLDILKE QWSPALTISK VLLSICSLLT DPNPDDPLVP EIAHTYKTDR
201: VKYESTARSW TQKYAMG

Best Arabidopsis Sequence Match ( AT5G56150.1 )
(BLAST)

001: MASKRINKEL RDLQRDPPVS CSAGPTGDDM FQWQATIMGP ADSPFAGGVF LVTIHFPPDY PFKPPKVAFR TKVYHPNINS NGSICLDILK EQWSPALTVS
101: KVLLSICSLL TDPNPDDPLV PEIAHIYKTD RVKYESTAQS WTQKYAMG

Arabidopsis Description

UBC30UBC30 [Source:UniProtKB/TrEMBL;Acc:A0A178UMN8]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.