Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31408 | Canola | cytosol | 99.32 | 99.32 |
| AT2G16740.1 | Thale cress | cytosol | 91.89 | 91.89 |
| CDX89747 | Canola | cytosol | 87.16 | 87.16 |
| KRH24311 | Soybean | cytosol | 86.49 | 86.49 |
| CDY02238 | Canola | cytosol | 86.49 | 86.49 |
| KRH29288 | Soybean | cytosol | 86.49 | 86.49 |
| VIT_03s0038g02390.t01 | Wine grape | cytosol | 85.14 | 85.14 |
| PGSC0003DMT400009229 | Potato | nucleus | 85.14 | 85.14 |
| Solyc02g083570.2.1 | Tomato | cytosol | 84.46 | 84.46 |
| CDX96210 | Canola | cytosol | 83.78 | 83.78 |
| CDY14388 | Canola | cytosol | 83.78 | 83.78 |
| CDY35636 | Canola | cytosol | 83.78 | 83.78 |
| CDY47067 | Canola | cytosol | 83.78 | 83.78 |
| CDY49174 | Canola | cytosol | 83.78 | 83.78 |
| Os02t0120600-01 | Rice | cytosol | 83.78 | 83.78 |
| GSMUA_Achr3P26650_001 | Banana | cytosol, mitochondrion, peroxisome | 82.43 | 82.43 |
| CDY34409 | Canola | cytosol | 82.43 | 82.43 |
| CDY25571 | Canola | cytosol | 82.43 | 82.43 |
| PGSC0003DMT400058107 | Potato | cytosol, mitochondrion | 81.76 | 81.76 |
| Solyc03g033410.2.1 | Tomato | cytosol, mitochondrion | 81.76 | 81.76 |
| TraesCS6A01G071100.1 | Wheat | cytosol | 81.76 | 81.21 |
| TraesCS6B01G095200.1 | Wheat | cytosol | 81.76 | 81.21 |
| TraesCS6D01G069000.1 | Wheat | cytosol | 81.76 | 81.21 |
| KXG29317 | Sorghum | nucleus | 81.08 | 81.08 |
| Zm00001d053897_P001 | Maize | mitochondrion | 80.41 | 80.41 |
| Bra001995.1-P | Field mustard | cytosol | 97.3 | 80.0 |
| CDY17396 | Canola | cytosol | 79.73 | 79.73 |
| GSMUA_Achr7P17820_001 | Banana | cytosol | 79.73 | 79.73 |
| CDY51965 | Canola | cytosol | 79.73 | 79.73 |
| CDX76970 | Canola | cytosol | 79.05 | 79.05 |
| CDY68877 | Canola | cytosol, mitochondrion | 81.08 | 75.0 |
| CDY06521 | Canola | cytosol, plastid | 81.08 | 75.0 |
| CDY11958 | Canola | cytosol | 81.76 | 69.94 |
| CDY08368 | Canola | cytosol | 74.32 | 69.18 |
| CDY54342 | Canola | cytosol | 83.78 | 67.39 |
| CDY39254 | Canola | cytosol | 49.32 | 62.93 |
| CDY38184 | Canola | cytosol | 72.97 | 60.0 |
| CDY23674 | Canola | cytosol | 42.57 | 56.76 |
| CDY37098 | Canola | cytosol | 41.89 | 55.86 |
| CDX73346 | Canola | cytosol | 41.89 | 55.86 |
| CDY36778 | Canola | cytosol | 81.08 | 55.3 |
| CDY06520 | Canola | cytosol | 52.7 | 50.32 |
| CDY40025 | Canola | cytosol | 48.65 | 47.06 |
| CDX83936 | Canola | cytosol | 47.97 | 46.41 |
| CDX81788 | Canola | cytosol | 47.97 | 46.41 |
| CDY54372 | Canola | cytosol | 47.97 | 46.41 |
| CDY35126 | Canola | cytosol | 47.97 | 46.41 |
| CDX88485 | Canola | cytosol | 47.3 | 45.75 |
| CDX87428 | Canola | cytosol | 47.3 | 45.75 |
| CDX96802 | Canola | cytosol | 47.3 | 45.75 |
| CDY14587 | Canola | cytosol | 47.3 | 45.45 |
| CDY26882 | Canola | cytosol | 43.92 | 44.83 |
| CDY65274 | Canola | cytosol | 43.92 | 44.52 |
| CDY57941 | Canola | cytosol | 45.95 | 43.87 |
| CDY66232 | Canola | mitochondrion, nucleus | 41.22 | 40.67 |
| CDY30726 | Canola | mitochondrion, nucleus | 41.22 | 40.67 |
| CDY11654 | Canola | mitochondrion | 41.22 | 40.13 |
| CDY38761 | Canola | mitochondrion | 41.22 | 40.13 |
| CDX79272 | Canola | cytosol | 45.95 | 40.0 |
| CDY39315 | Canola | mitochondrion | 40.54 | 39.47 |
| CDY59253 | Canola | mitochondrion | 46.62 | 37.7 |
| CDY23617 | Canola | plastid | 46.62 | 37.7 |
| CDY03040 | Canola | mitochondrion, nucleus | 35.14 | 36.88 |
| CDY68969 | Canola | mitochondrion | 33.11 | 33.79 |
| CDX84034 | Canola | nucleus | 24.32 | 33.64 |
| CDX73344 | Canola | cytosol | 35.14 | 31.71 |
| CDX96859 | Canola | mitochondrion | 37.84 | 29.63 |
Protein Annotations
| MapMan:19.2.2.5.2 | Gene3D:3.10.110.10 | GO:A0A078C565 | EnsemblPlants:CDX71304 | ProteinID:CDX71304 | ProteinID:CDX71304.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016740 |
| EnsemblPlantsGene:GSBRNA2T00144941001 | InterPro:IPR000608 | InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 |
| PANTHER:PTHR24068 | PANTHER:PTHR24068:SF47 | MetaCyc:PWY-7511 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniPathway:UPA00143 | UniParc:UPI0004EAF0FD | : | : |
Description
BnaC07g05830D
Coordinates
chrLK031792:+:2783211..2784426
Molecular Weight (calculated)
16729.2 Da
IEP (calculated)
7.947
GRAVY (calculated)
-0.258
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRRILKEL RELQRDPPMS CSAGPVGEDM FHWQATIMGP NESPYTGGVF LVTINFSQDY PFKPPKVVFR TKVFHPNINS NGNICLDILK DQWSPALTIS
101: KVLLSVCSLL TDPNPDDPLV PEIAHICKTD KAKYEAMARS WTQKYALY
101: KVLLSVCSLL TDPNPDDPLV PEIAHICKTD KAKYEAMARS WTQKYALY
001: MATRRILKEL KELQRDPPVS CSAGPTGEDM FHWQATIMGP NESPYSGGVF LVNIHFPPDY PFKPPKVVFR TKVFHPNINS NGNICLDILK DQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHIYKTD KTKYEAMARS WTQKYALF
101: KVLLSICSLL TDPNPDDPLV PEIAHIYKTD KTKYEAMARS WTQKYALF
Arabidopsis Description
UBC29UBC29 [Source:UniProtKB/TrEMBL;Acc:A0A178VQZ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.