CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, vacuole
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82332	Canola	cytosol	93.16	93.16
CDY71041	Canola	cytosol	75.94	77.97
CDX99325	Canola	cytosol	76.89	77.07
CDX92262	Canola	cytosol	74.29	76.27
AT3G18710.1	Thale cress	cytosol	73.35	74.94
CDX84538	Canola	cytosol	54.95	55.61
CDY08864	Canola	cytosol	54.95	55.61
KRH43397	Soybean	cytosol	49.53	50.24
KRH59546	Soybean	cytosol	48.82	49.52
VIT_04s0044g00870.t01	Wine grape	cytosol	48.11	49.51
KRH53869	Soybean	cytosol	47.88	48.68
GSMUA_Achr8P30420_001	Banana	mitochondrion	29.95	46.52
KRH36899	Soybean	cytosol	37.97	43.4
PGSC0003DMT400065698	Potato	cytosol	42.22	42.62
Solyc11g005700.1.1	Tomato	cytosol	42.22	42.62
GSMUA_Achr10P...	Banana	plastid	33.02	36.46
GSMUA_Achr6P18140_001	Banana	cytosol	33.96	35.21
GSMUA_Achr5P01020_001	Banana	cytosol	33.02	34.91
Zm00001d016719_P001	Maize	cytosol	34.43	34.03
Zm00001d050689_P001	Maize	cytosol	33.02	32.63
Os04t0418500-01	Rice	plastid	34.67	32.59
EES05205	Sorghum	cytosol	34.67	32.45
OQU81548	Sorghum	mitochondrion	34.2	32.44
TraesCS2B01G315100.1	Wheat	cytosol	33.73	32.43
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	33.73	32.43
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	33.49	32.2
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	33.49	31.98
Os02t0540700-00	Rice	plastid	34.43	28.91
HORVU2Hr1G074130.1	Barley	plastid	33.49	27.41
Os05t0439400-01	Rice	plasma membrane	28.54	26.77
KXG22102	Sorghum	mitochondrion	28.07	26.04
Zm00001d038280_P001	Maize	cytosol	27.59	25.89
TraesCS1B01G284200.1	Wheat	mitochondrion	27.59	25.83
CDX84587	Canola	cytosol	24.76	25.67
CDY23218	Canola	cytosol	23.82	25.51
CDX78096	Canola	cytosol	23.35	25.45
CDX95337	Canola	cytosol	24.53	25.43
TraesCS1D01G274600.1	Wheat	mitochondrion	27.12	25.39
TraesCS1A01G274800.1	Wheat	mitochondrion	27.12	25.39
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	26.89	25.17
CDX79645	Canola	cytosol	24.06	25.0
CDX75084	Canola	cytosol	23.82	24.88
CDY59599	Canola	cytosol	23.82	24.69
CDX84168	Canola	cytosol	23.58	24.63
CDX92328	Canola	cytosol	24.53	24.59
CDY40422	Canola	cytosol	23.82	24.51
CDY32070	Canola	cytosol	23.82	24.51
CDX95458	Canola	cytosol	23.82	24.22
CDY50158	Canola	cytosol	23.82	24.22
CDX99233	Canola	cytosol, peroxisome, plastid	23.82	23.99
CDY27655	Canola	mitochondrion	24.76	23.97
CDX99694	Canola	mitochondrion	24.29	23.52
CDY69247	Canola	cytosol	24.29	23.25
CDY53920	Canola	cytosol	23.82	23.17
CDY18670	Canola	cytosol	24.06	23.02
CDX83098	Canola	cytosol	24.06	23.02
CDY47911	Canola	cytosol	22.88	22.99
CDY59286	Canola	cytosol	22.88	22.93
CDY16513	Canola	cytosol	22.88	22.93
CDY53333	Canola	cytosol	24.06	22.82
CDY51529	Canola	mitochondrion	19.81	22.4
CDY67531	Canola	cytosol	23.11	21.92
CDY01063	Canola	cytosol	22.64	21.82
CDY08490	Canola	cytosol	22.64	21.72
CDY28714	Canola	mitochondrion	19.1	21.6
CDX73849	Canola	cytosol	23.58	21.41
CDY50319	Canola	cytosol	21.46	21.31
CDY16432	Canola	cytosol	21.46	21.26
CDX92016	Canola	mitochondrion	18.4	21.2
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	17.69	20.38

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078CGK2	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDX75980	ProteinID:CDX75980	ProteinID:CDX75980.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00124019001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF20	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE88CA	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC03g40630D

Coordinates

chrLK031805:-:2367112..2368447

Molecular Weight (calculated)

46880.4 Da

IEP (calculated)

9.171

GRAVY (calculated)

-0.043

Length

424 amino acids

Sequence
(BLAST)

001: MGRDETERYI TVPSLFRCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQIL RTKDFVPNLT LQRLIKAWSD SVGRRADGSP LRGIPTVEEV
101: NESLRRLSLE KDDEIRLENL SRIVRFAKDS DANREFLWKR KDFAPMLVDI IAAVDGGTRA TAKIKLGLLA IMILDTIIKG GKERDRERLS KLMLTDGGGC
201: LAALLLAIRR GNLKTKIESV RVLEMISFDA TSNEIISECD GIVPELIKSI SSDTDPSLKE ASLSFLITIS TSKRVRSKLI AEKAITKIKD ILLMETTSVA
301: VTEKSLKLLE TLSSKREGRS EICGGDGGRC VEGVVRKLLK VSAAATEHAV TILWCLCYVF REDKKAEETV VRCNGLTKLL VVIQSSCSPV VRQMAKDLIK
401: VLKVNTSASV LSAYETNTTH ITPF

Best Arabidopsis Sequence Match ( AT3G18710.1 )
(BLAST)

001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF

Arabidopsis Description

PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.