Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX73849 | Canola | cytosol | 92.89 | 86.72 |
CDY01063 | Canola | cytosol | 80.05 | 79.32 |
CDY08490 | Canola | cytosol | 77.98 | 76.92 |
CDY47911 | Canola | cytosol | 74.08 | 76.54 |
CDY67531 | Canola | cytosol | 76.83 | 74.94 |
AT3G11840.1 | Thale cress | cytosol | 77.29 | 73.9 |
VIT_08s0105g00200.t01 | Wine grape | cytosol | 45.41 | 48.77 |
KRH72180 | Soybean | cytosol | 25.23 | 47.41 |
KRH68013 | Soybean | cytosol | 29.36 | 43.24 |
GSMUA_Achr11P... | Banana | cytosol | 34.63 | 41.26 |
CDY32070 | Canola | cytosol | 37.39 | 39.56 |
CDX79645 | Canola | cytosol | 36.93 | 39.46 |
CDY40422 | Canola | cytosol | 37.16 | 39.32 |
Solyc01g007050.1.1 | Tomato | cytosol | 37.84 | 39.19 |
CDX84168 | Canola | cytosol | 36.47 | 39.16 |
CDX84587 | Canola | cytosol | 36.7 | 39.12 |
CDX75084 | Canola | cytosol | 36.24 | 38.92 |
PGSC0003DMT400054946 | Potato | cytosol | 37.16 | 38.48 |
CDY23218 | Canola | cytosol | 33.72 | 37.12 |
CDX95337 | Canola | cytosol | 34.63 | 36.92 |
CDX78096 | Canola | cytosol | 32.8 | 36.76 |
CDY59599 | Canola | cytosol | 33.72 | 35.94 |
CDX92328 | Canola | cytosol | 25.0 | 25.77 |
CDX99233 | Canola | cytosol, peroxisome, plastid | 24.77 | 25.65 |
CDY16513 | Canola | cytosol | 24.77 | 25.53 |
CDY59286 | Canola | cytosol | 24.77 | 25.53 |
CDX95458 | Canola | cytosol | 24.31 | 25.42 |
CDY50158 | Canola | cytosol | 24.08 | 25.18 |
CDX99694 | Canola | mitochondrion | 25.0 | 24.89 |
CDY27655 | Canola | mitochondrion | 24.77 | 24.66 |
CDY50319 | Canola | cytosol | 24.08 | 24.59 |
CDY16432 | Canola | cytosol | 24.08 | 24.53 |
CDX75980 | Canola | cytosol | 23.17 | 23.82 |
CDX92262 | Canola | cytosol | 22.48 | 23.73 |
CDY08864 | Canola | cytosol | 22.71 | 23.63 |
CDX84538 | Canola | cytosol | 22.48 | 23.39 |
CDX82332 | Canola | cytosol | 22.48 | 23.11 |
CDX74232 | Canola | cytosol, extracellular, mitochondrion, plastid | 19.27 | 22.83 |
CDX99325 | Canola | cytosol | 22.02 | 22.7 |
CDX92016 | Canola | mitochondrion | 19.04 | 22.55 |
CDY71041 | Canola | cytosol | 21.33 | 22.52 |
CDY53333 | Canola | cytosol | 22.71 | 22.15 |
CDX83098 | Canola | cytosol | 22.25 | 21.9 |
CDY28714 | Canola | mitochondrion | 18.58 | 21.6 |
CDY51529 | Canola | mitochondrion | 18.12 | 21.07 |
CDY18670 | Canola | cytosol | 21.1 | 20.77 |
CDY69247 | Canola | cytosol | 20.64 | 20.32 |
Protein Annotations
Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078IS82 | UniProt:A0A078IS82 | InterPro:ARM-like |
InterPro:ARM-type_fold | EnsemblPlants:CDY53920 | ProteinID:CDY53920 | ProteinID:CDY53920.1 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00011694001 | InterPro:IPR003613 | InterPro:IPR011989 |
InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF24 | SMART:SM00504 |
SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EE3ABD | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
SEG:seg | : | : | : | : | : |
Description
BnaC03g73510DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078IS82]
Coordinates
chrLK033251:-:9509..11674
Molecular Weight (calculated)
48621.3 Da
IEP (calculated)
5.839
GRAVY (calculated)
-0.034
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHEDEEIEI PNYFICPISL DIMKDPVIAV SGITYDRESI DKWLEKVSSC PVTKQPLPSD SDLTPNHTLR RLIQHWCVEN ATLGVVRIPT PRVPPGKPNV
101: VDEIKNLKKF GDEALGRKDT LKKLELLAID GETNRRLMHE GGVHRSLILF IVKCTREEEE EGQRRIKEQL DESLRLLHLI GVPLNDARTI LMENDRILGS
201: LSLVLNQQNF LNKAYTIVLL RNLTENTSSH IVERLNEDIL KGIIGFLEEV VSSFNRTSPN VTVTAALMIL LETSSWSRNK HILIDLGAVS QLIELEISSA
301: GEKRATELVL GVLSRLCCCT NGRAEILAHG GGLAIVTKRL LGVSIAADDR ALSILSTVST LSPEKAVVEE MVCVGTVEKL CTVLRVDCGL SLKEKAKEIL
401: RDHFDELKKF PCIDVRLLTK LLSSSHEDLL AELLKT
101: VDEIKNLKKF GDEALGRKDT LKKLELLAID GETNRRLMHE GGVHRSLILF IVKCTREEEE EGQRRIKEQL DESLRLLHLI GVPLNDARTI LMENDRILGS
201: LSLVLNQQNF LNKAYTIVLL RNLTENTSSH IVERLNEDIL KGIIGFLEEV VSSFNRTSPN VTVTAALMIL LETSSWSRNK HILIDLGAVS QLIELEISSA
301: GEKRATELVL GVLSRLCCCT NGRAEILAHG GGLAIVTKRL LGVSIAADDR ALSILSTVST LSPEKAVVEE MVCVGTVEKL CTVLRVDCGL SLKEKAKEIL
401: RDHFDELKKF PCIDVRLLTK LLSSSHEDLL AELLKT
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.