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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX73849 Canola cytosol 92.89 86.72
CDY01063 Canola cytosol 80.05 79.32
CDY08490 Canola cytosol 77.98 76.92
CDY47911 Canola cytosol 74.08 76.54
CDY67531 Canola cytosol 76.83 74.94
AT3G11840.1 Thale cress cytosol 77.29 73.9
VIT_08s0105g00200.t01 Wine grape cytosol 45.41 48.77
KRH72180 Soybean cytosol 25.23 47.41
KRH68013 Soybean cytosol 29.36 43.24
GSMUA_Achr11P... Banana cytosol 34.63 41.26
CDY32070 Canola cytosol 37.39 39.56
CDX79645 Canola cytosol 36.93 39.46
CDY40422 Canola cytosol 37.16 39.32
Solyc01g007050.1.1 Tomato cytosol 37.84 39.19
CDX84168 Canola cytosol 36.47 39.16
CDX84587 Canola cytosol 36.7 39.12
CDX75084 Canola cytosol 36.24 38.92
PGSC0003DMT400054946 Potato cytosol 37.16 38.48
CDY23218 Canola cytosol 33.72 37.12
CDX95337 Canola cytosol 34.63 36.92
CDX78096 Canola cytosol 32.8 36.76
CDY59599 Canola cytosol 33.72 35.94
CDX92328 Canola cytosol 25.0 25.77
CDX99233 Canola cytosol, peroxisome, plastid 24.77 25.65
CDY16513 Canola cytosol 24.77 25.53
CDY59286 Canola cytosol 24.77 25.53
CDX95458 Canola cytosol 24.31 25.42
CDY50158 Canola cytosol 24.08 25.18
CDX99694 Canola mitochondrion 25.0 24.89
CDY27655 Canola mitochondrion 24.77 24.66
CDY50319 Canola cytosol 24.08 24.59
CDY16432 Canola cytosol 24.08 24.53
CDX75980 Canola cytosol 23.17 23.82
CDX92262 Canola cytosol 22.48 23.73
CDY08864 Canola cytosol 22.71 23.63
CDX84538 Canola cytosol 22.48 23.39
CDX82332 Canola cytosol 22.48 23.11
CDX74232 Canola cytosol, extracellular, mitochondrion, plastid 19.27 22.83
CDX99325 Canola cytosol 22.02 22.7
CDX92016 Canola mitochondrion 19.04 22.55
CDY71041 Canola cytosol 21.33 22.52
CDY53333 Canola cytosol 22.71 22.15
CDX83098 Canola cytosol 22.25 21.9
CDY28714 Canola mitochondrion 18.58 21.6
CDY51529 Canola mitochondrion 18.12 21.07
CDY18670 Canola cytosol 21.1 20.77
CDY69247 Canola cytosol 20.64 20.32
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1GO:A0A078IS82UniProt:A0A078IS82InterPro:ARM-like
InterPro:ARM-type_foldEnsemblPlants:CDY53920ProteinID:CDY53920ProteinID:CDY53920.1GO:GO:0003674GO:GO:0003824
GO:GO:0004842GO:GO:0005488GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016567GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00011694001InterPro:IPR003613InterPro:IPR011989
InterPro:IPR013083PFAM:PF04564PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF24SMART:SM00504
SUPFAM:SSF48371SUPFAM:SSF57850UniPathway:UPA00143UniParc:UPI0004EE3ABDInterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHD
SEG:seg:::::
Description
BnaC03g73510DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078IS82]
Coordinates
chrLK033251:-:9509..11674
Molecular Weight (calculated)
48621.3 Da
IEP (calculated)
5.839
GRAVY (calculated)
-0.034
Length
436 amino acids
Sequence
(BLAST)
001: MDHEDEEIEI PNYFICPISL DIMKDPVIAV SGITYDRESI DKWLEKVSSC PVTKQPLPSD SDLTPNHTLR RLIQHWCVEN ATLGVVRIPT PRVPPGKPNV
101: VDEIKNLKKF GDEALGRKDT LKKLELLAID GETNRRLMHE GGVHRSLILF IVKCTREEEE EGQRRIKEQL DESLRLLHLI GVPLNDARTI LMENDRILGS
201: LSLVLNQQNF LNKAYTIVLL RNLTENTSSH IVERLNEDIL KGIIGFLEEV VSSFNRTSPN VTVTAALMIL LETSSWSRNK HILIDLGAVS QLIELEISSA
301: GEKRATELVL GVLSRLCCCT NGRAEILAHG GGLAIVTKRL LGVSIAADDR ALSILSTVST LSPEKAVVEE MVCVGTVEKL CTVLRVDCGL SLKEKAKEIL
401: RDHFDELKKF PCIDVRLLTK LLSSSHEDLL AELLKT
Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.