CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08864	Canola	cytosol	97.85	97.85
AT5G64660.1	Thale cress	cytosol	88.78	88.57
VIT_04s0044g00870.t01	Wine grape	cytosol	54.42	55.34
CDX75980	Canola	cytosol	55.61	54.95
CDX82332	Canola	cytosol	55.13	54.48
KRH43397	Soybean	cytosol	54.18	54.31
CDY71041	Canola	cytosol	53.22	54.0
KRH59546	Soybean	cytosol	53.7	53.83
CDX92262	Canola	cytosol	52.98	53.75
CDX99325	Canola	cytosol	53.46	52.96
KRH53869	Soybean	cytosol	51.31	51.56
PGSC0003DMT400065698	Potato	cytosol	47.73	47.62
KRH36899	Soybean	cytosol	42.0	47.44
Solyc11g005700.1.1	Tomato	cytosol	47.26	47.14
GSMUA_Achr8P30420_001	Banana	mitochondrion	29.12	44.69
GSMUA_Achr10P...	Banana	plastid	33.41	36.46
GSMUA_Achr5P01020_001	Banana	cytosol	33.89	35.41
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	37.23	35.37
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	37.23	35.37
TraesCS2B01G315100.1	Wheat	cytosol	37.23	35.37
GSMUA_Achr6P18140_001	Banana	cytosol	34.13	34.96
Zm00001d016719_P001	Maize	cytosol	35.32	34.5
Zm00001d050689_P001	Maize	cytosol	34.37	33.57
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	35.32	33.33
OQU81548	Sorghum	mitochondrion	35.32	33.11
Os04t0418500-01	Rice	plastid	35.32	32.82
EES05205	Sorghum	cytosol	35.32	32.67
HORVU2Hr1G074130.1	Barley	plastid	37.47	30.31
Os02t0540700-00	Rice	plastid	36.04	29.9
CDX78096	Canola	cytosol	24.82	26.74
CDY23218	Canola	cytosol	24.82	26.26
CDX95337	Canola	cytosol	25.54	26.16
CDY59599	Canola	cytosol	25.54	26.16
CDY40422	Canola	cytosol	25.3	25.73
CDX84587	Canola	cytosol	25.06	25.67
KXG22102	Sorghum	mitochondrion	27.92	25.6
CDY32070	Canola	cytosol	25.06	25.49
Zm00001d038280_P001	Maize	cytosol	27.45	25.44
Os05t0439400-01	Rice	plasma membrane	27.45	25.44
CDX79645	Canola	cytosol	24.58	25.25
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	27.21	25.17
CDX75084	Canola	cytosol	24.11	24.88
TraesCS1A01G274800.1	Wheat	mitochondrion	26.73	24.72
TraesCS1B01G284200.1	Wheat	mitochondrion	26.73	24.72
CDX84168	Canola	cytosol	23.87	24.63
TraesCS1D01G274600.1	Wheat	mitochondrion	26.49	24.5
CDY69247	Canola	cytosol	25.78	24.38
CDY18670	Canola	cytosol	25.54	24.15
CDX83098	Canola	cytosol	25.54	24.15
CDX99694	Canola	mitochondrion	24.82	23.74
CDX92328	Canola	cytosol	23.87	23.64
CDY27655	Canola	mitochondrion	24.58	23.52
CDX99233	Canola	cytosol, peroxisome, plastid	23.63	23.52
CDX95458	Canola	cytosol	23.39	23.5
CDY50158	Canola	cytosol	23.39	23.5
CDY53333	Canola	cytosol	25.06	23.49
CDY16513	Canola	cytosol	23.39	23.17
CDY59286	Canola	cytosol	23.39	23.17
CDY50319	Canola	cytosol	23.15	22.72
CDY16432	Canola	cytosol	23.15	22.66
CDX92016	Canola	mitochondrion	19.81	22.55
CDY47911	Canola	cytosol	22.67	22.51
CDY53920	Canola	cytosol	23.39	22.48
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	19.09	21.74
CDY67531	Canola	cytosol	22.91	21.48
CDY28714	Canola	mitochondrion	19.09	21.33
CDX73849	Canola	cytosol	23.39	20.98
CDY01063	Canola	cytosol	21.72	20.68
CDY08490	Canola	cytosol	21.48	20.36
CDY51529	Canola	mitochondrion	18.14	20.27

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078DB55	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDX84538	ProteinID:CDX84538	ProteinID:CDX84538.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00141780001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF20	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE82E2	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC03g49620D

Coordinates

chrLK031837:-:1743928..1745336

Molecular Weight (calculated)

46953.1 Da

IEP (calculated)

8.819

GRAVY (calculated)

-0.067

Length

419 amino acids

Sequence
(BLAST)

001: MRKDDLYITV PSFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRASVESAE LAAPTRDEIA
101: DAIDRVKVEK EERFDREVLA KILRFARESD DNRGFLAGKD DFVRLLVDLM SQIDFKTTSA AKLLIVQEAV KILSMIQSKI SDRRRFSNLV LNNGRDRLTT
201: IVYFYKTGNV ELKIDCAGLL EFIAVDSESK VSIAERDGLV VELMKSISRD SDSSLIEATL SCLIAISSPR RVKLNLIREK LIKDLTKLLT DPTTASVSVT
301: EKCLKLLESL ASTKEGRSEI CGGDGECLKT VVRKLMKVST AATEHAVTVL WSVSYIFKEE KALEAVTSTN GVTKILLLLQ SNCSPAVRRM LTDLLKVFKV
401: NSRSCLSAYD TKTTHIMPF

Best Arabidopsis Sequence Match ( AT5G64660.1 )
(BLAST)

001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF

Arabidopsis Description

PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.