Factsheet for Os05t0439400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0761200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	Os02t0761200-01	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038280_P001	Maize	cytosol	88.27	88.27
TraesCS1A01G274800.1	Wheat	mitochondrion	88.05	87.86
TraesCS1D01G274600.1	Wheat	mitochondrion	87.83	87.64
KXG22102	Sorghum	mitochondrion	88.5	87.53
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	87.61	87.42
TraesCS1B01G284200.1	Wheat	mitochondrion	86.95	86.75
GSMUA_Achr5P01020_001	Banana	cytosol	38.94	43.89
Os04t0418500-01	Rice	plastid	34.51	34.59
Os02t0540700-00	Rice	plastid	36.73	32.87
VIT_18s0166g00190.t01	Wine grape	plasma membrane	28.1	31.75
PGSC0003DMT400002079	Potato	cytosol	28.54	30.86
VIT_04s0044g00870.t01	Wine grape	cytosol	28.1	30.83
KRH70331	Soybean	mitochondrion	27.65	30.71
KRH08734	Soybean	mitochondrion	28.1	30.68
Solyc04g071030.1.1	Tomato	cytosol	28.32	29.98
CDX92262	Canola	cytosol	26.99	29.54
KRH53869	Soybean	cytosol	27.21	29.5
Bra022347.1-P	Field mustard	cytosol	26.99	28.77
AT3G18710.1	Thale cress	cytosol	26.33	28.67
Solyc11g005700.1.1	Tomato	cytosol	26.55	28.57
Bra001717.1-P	Field mustard	cytosol	26.77	28.54
CDX75980	Canola	cytosol	26.77	28.54
CDX82332	Canola	cytosol	26.77	28.54
CDX99325	Canola	cytosol	26.55	28.37
CDY71041	Canola	cytosol	25.89	28.33
PGSC0003DMT400065698	Potato	cytosol	26.11	28.1
Bra037568.1-P	Field mustard	cytosol	25.44	27.84
CDX84538	Canola	cytosol	25.44	27.45
Os01t0865700-00	Rice	plastid	24.56	27.27
KRH59546	Soybean	cytosol	25.22	27.27
Bra024318.1-P	Field mustard	cytosol	25.22	27.21
CDY08864	Canola	cytosol	25.22	27.21
KRH43397	Soybean	cytosol	25.0	27.03
KRH36899	Soybean	cytosol	21.9	26.68
Os02t0548700-00	Rice	cytosol, extracellular, plastid	24.34	26.38
AT5G64660.1	Thale cress	cytosol	24.34	26.19
AT5G09800.1	Thale cress	cytosol	23.45	25.92
Os04t0686000-01	Rice	cytosol	23.23	25.42
Os04t0589700-01	Rice	cytosol	23.67	25.42
Os04t0437300-01	Rice	cytosol	22.57	23.94
Os02t0539200-01	Rice	cytosol	23.01	23.53
Os03t0240600-01	Rice	plastid	22.79	23.15
Os02t0690600-01	Rice	cytosol	21.46	22.82
Os06t0248500-00	Rice	mitochondrion	22.57	22.52
Os02t0738200-01	Rice	mitochondrion	21.68	21.49
Os12t0161100-00	Rice	cytosol	20.8	21.41
Os03t0232600-01	Rice	cytosol	20.8	20.48

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4338918	ProteinID:AAT07620.1	ProteinID:BAF17579.1	ProteinID:BAS94229.1
ProteinID:EEE63863.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613
InterPro:IPR013083	EnsemblPlantsGene:Os05g0439400	EnsemblPlants:Os05t0439400-01	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849
PANTHER:PTHR22849:SF21	UniProt:Q75HW6	SMART:SM00504	SUPFAM:SSF57850	UniParc:UPI000035E02E	InterPro:Ubox_domain
RefSeq:XP_015637395.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

plant U-box-containing protein 44, U-box protein 44Similar to Arm repeat containing protein. (Os05t0439400-01)

Coordinates

chr5:+:21525171..21526731

Molecular Weight (calculated)

46301.4 Da

IEP (calculated)

8.891

GRAVY (calculated)

0.263

Length

452 amino acids

Sequence
(BLAST)

001: MDAAVAGQHA RRRIRPPEPL VMAGSPSTPA AFRCPISLEV MRSPVSLPTG ATYDRASIQR WLDTGHRTCP ATRLPLASTD LVPNLLLRRL IHLHAATLPP
101: SPSPEVVLSQ LAAAGGEPAA AEKAVRSLAA KIAPEKGKRA SVASAVAADL DSAVPALLSF AKGGAGADAR VDAVRILATV APELVPYLTG DGTEKRGRVR
201: MAVEALAAVL SADGVGEDTK EGLIAALVAG DLGHIVNTLI AAGANGVMVL ETILTSPVPD ADAKTAIADR SELFPDLVRI LKDAASPAAI RCMAAAVQVR
301: GRPARSSMVR AGAIPALALA VAAAPTAVAE SALGLLVEAA RCTDGKAAIG ADAAEVAAAV MGRMIRVGPA GREFAVAVLW LSCCAGGGDR RMREAVASAP
401: EAVGKLLVVM QGDCSPSTSR MAGELLRAVR MEQERKGLAA AYDSRTIHVM PY

Best Arabidopsis Sequence Match ( AT3G18710.1 )
(BLAST)

001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF

Arabidopsis Description

PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.