Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024318.1-P | Field mustard | cytosol | 99.52 | 99.52 |
| CDX84538 | Canola | cytosol | 97.85 | 97.85 |
| AT5G64660.1 | Thale cress | cytosol | 89.98 | 89.76 |
| VIT_04s0044g00870.t01 | Wine grape | cytosol | 54.65 | 55.58 |
| CDX75980 | Canola | cytosol | 55.61 | 54.95 |
| KRH43397 | Soybean | cytosol | 54.42 | 54.55 |
| CDX82332 | Canola | cytosol | 54.89 | 54.25 |
| KRH59546 | Soybean | cytosol | 53.94 | 54.07 |
| CDY71041 | Canola | cytosol | 52.98 | 53.75 |
| CDX92262 | Canola | cytosol | 52.98 | 53.75 |
| CDX99325 | Canola | cytosol | 53.7 | 53.19 |
| KRH53869 | Soybean | cytosol | 51.55 | 51.8 |
| PGSC0003DMT400065698 | Potato | cytosol | 47.97 | 47.86 |
| KRH36899 | Soybean | cytosol | 42.24 | 47.71 |
| Solyc11g005700.1.1 | Tomato | cytosol | 47.49 | 47.38 |
| GSMUA_Achr8P30420_001 | Banana | mitochondrion | 28.64 | 43.96 |
| GSMUA_Achr10P... | Banana | plastid | 33.17 | 36.2 |
| GSMUA_Achr5P01020_001 | Banana | cytosol | 34.37 | 35.91 |
| TraesCS2A01G298600.1 | Wheat | cytosol, mitochondrion, plastid | 36.99 | 35.15 |
| TraesCS2B01G315100.1 | Wheat | cytosol | 36.99 | 35.15 |
| TraesCS2D01G296700.1 | Wheat | cytosol, mitochondrion, plastid | 36.99 | 35.15 |
| GSMUA_Achr6P18140_001 | Banana | cytosol | 34.13 | 34.96 |
| Zm00001d016719_P001 | Maize | cytosol | 35.08 | 34.27 |
| Zm00001d050689_P001 | Maize | cytosol | 34.13 | 33.33 |
| Zm00001d025379_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 35.08 | 33.11 |
| EES05205 | Sorghum | cytosol | 35.56 | 32.89 |
| OQU81548 | Sorghum | mitochondrion | 35.08 | 32.89 |
| Os04t0418500-01 | Rice | plastid | 35.08 | 32.59 |
| HORVU2Hr1G074130.1 | Barley | plastid | 37.23 | 30.12 |
| Os02t0540700-00 | Rice | plastid | 35.8 | 29.7 |
| CDX78096 | Canola | cytosol | 25.06 | 26.99 |
| CDY23218 | Canola | cytosol | 25.06 | 26.52 |
| CDX95337 | Canola | cytosol | 25.78 | 26.41 |
| CDY59599 | Canola | cytosol | 25.78 | 26.41 |
| CDY40422 | Canola | cytosol | 25.78 | 26.21 |
| CDY32070 | Canola | cytosol | 25.54 | 25.97 |
| CDX84587 | Canola | cytosol | 25.3 | 25.92 |
| CDX79645 | Canola | cytosol | 24.82 | 25.49 |
| Os05t0439400-01 | Rice | plasma membrane | 27.21 | 25.22 |
| KXG22102 | Sorghum | mitochondrion | 27.45 | 25.16 |
| CDX75084 | Canola | cytosol | 24.34 | 25.12 |
| Zm00001d038280_P001 | Maize | cytosol | 26.97 | 25.0 |
| CDX84168 | Canola | cytosol | 24.11 | 24.88 |
| HORVU1Hr1G074180.1 | Barley | mitochondrion, plastid | 26.73 | 24.72 |
| CDX83098 | Canola | cytosol | 26.01 | 24.61 |
| TraesCS1A01G274800.1 | Wheat | mitochondrion | 26.49 | 24.5 |
| TraesCS1B01G284200.1 | Wheat | mitochondrion | 26.49 | 24.5 |
| CDY69247 | Canola | cytosol | 25.78 | 24.38 |
| TraesCS1D01G274600.1 | Wheat | mitochondrion | 26.25 | 24.28 |
| CDY18670 | Canola | cytosol | 25.54 | 24.15 |
| CDX92328 | Canola | cytosol | 24.34 | 24.11 |
| CDX99694 | Canola | mitochondrion | 25.06 | 23.97 |
| CDY53333 | Canola | cytosol | 25.54 | 23.94 |
| CDX99233 | Canola | cytosol, peroxisome, plastid | 23.87 | 23.75 |
| CDY27655 | Canola | mitochondrion | 24.82 | 23.74 |
| CDY50158 | Canola | cytosol | 23.63 | 23.74 |
| CDX95458 | Canola | cytosol | 23.63 | 23.74 |
| CDY16513 | Canola | cytosol | 23.63 | 23.4 |
| CDY59286 | Canola | cytosol | 23.63 | 23.4 |
| CDY47911 | Canola | cytosol | 22.91 | 22.75 |
| CDY50319 | Canola | cytosol | 23.15 | 22.72 |
| CDY53920 | Canola | cytosol | 23.63 | 22.71 |
| CDY16432 | Canola | cytosol | 23.15 | 22.66 |
| CDX92016 | Canola | mitochondrion | 19.57 | 22.28 |
| CDY67531 | Canola | cytosol | 23.15 | 21.7 |
| CDX74232 | Canola | cytosol, extracellular, mitochondrion, plastid | 18.85 | 21.47 |
| CDX73849 | Canola | cytosol | 23.63 | 21.2 |
| CDY28714 | Canola | mitochondrion | 18.85 | 21.07 |
| CDY01063 | Canola | cytosol | 21.96 | 20.91 |
| CDY08490 | Canola | cytosol | 21.72 | 20.59 |
| CDY51529 | Canola | mitochondrion | 17.9 | 20.0 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | GO:A0A078F750 | UniProt:A0A078F750 | InterPro:ARM-like |
| InterPro:ARM-type_fold | EnsemblPlants:CDY08864 | ProteinID:CDY08864 | ProteinID:CDY08864.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00000837001 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF20 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EDDA81 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g23600DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078F750]
Coordinates
chrLK031989:+:957634..959042
Molecular Weight (calculated)
46919.1 Da
IEP (calculated)
9.093
GRAVY (calculated)
-0.077
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKDDLYITV PSFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRASVEPAE LAAPTRDEIA
101: DAIDRVKVEK EERFDREVLA KILRFARESD DNRGFLAGKD DFVRLLVDLM SQVDFKTTSA AKLLIVQEAV KILSMIRSKI SDRRRFSNLV LNNGRDRLST
201: IVYFFKTGNV ELKIDCAGLL EFIAVDSESK VSIAERDGLV VELMKSISRD SDSSLIEATL SCLIAISSPR RVKLNLIREK LIKDLTKLLT DPTTSSVSVT
301: EKSLKLLESL ASTKEGRSEI CGGDGECLKT VVKKLMKVST AATEHAVTVL WSVSYLFKEE KALEAVTSTN GVTKILLLLQ SNCSPAVRRM LTDLLKVFKV
401: NSRSCLSAYD TKTTHIMPF
101: DAIDRVKVEK EERFDREVLA KILRFARESD DNRGFLAGKD DFVRLLVDLM SQVDFKTTSA AKLLIVQEAV KILSMIRSKI SDRRRFSNLV LNNGRDRLST
201: IVYFFKTGNV ELKIDCAGLL EFIAVDSESK VSIAERDGLV VELMKSISRD SDSSLIEATL SCLIAISSPR RVKLNLIREK LIKDLTKLLT DPTTSSVSVT
301: EKSLKLLESL ASTKEGRSEI CGGDGECLKT VVKKLMKVST AATEHAVTVL WSVSYLFKEE KALEAVTSTN GVTKILLLLQ SNCSPAVRRM LTDLLKVFKV
401: NSRSCLSAYD TKTTHIMPF
001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF
Arabidopsis Description
PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.