Factsheet for GSMUA_Achr6P18140_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P06810_001
GSMUA_Achr6P18810_001
GSMUA_Achr7P23200_001
GSMUA_Achr8P08140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	GSMUA_Achr11P...	AT4G33940.1	21798944
AT5G09800.1	GSMUA_Achr6P18810_001	AT4G33940.1	21798944
AT5G09800.1	GSMUA_Achr7P23200_001	AT4G33940.1	21798944
AT5G09800.1	GSMUA_Achr8P08140_001	AT4G33940.1	21798944
AT5G09800.1	GSMUA_Achr3P06810_001	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plastid	71.88	76.56
GSMUA_Achr8P30420_001	Banana	mitochondrion	43.28	64.84
Os04t0418500-01	Rice	plastid	56.72	51.44
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	55.75	51.35
Zm00001d016719_P001	Maize	cytosol	53.55	51.05
GSMUA_Achr5P01020_001	Banana	cytosol	49.63	50.62
OQU81548	Sorghum	mitochondrion	55.26	50.56
Zm00001d050689_P001	Maize	cytosol	52.81	50.35
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	53.79	49.89
TraesCS2B01G315100.1	Wheat	cytosol	53.55	49.66
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	53.55	49.66
EES05205	Sorghum	cytosol	54.03	48.79
Os02t0540700-00	Rice	plastid	55.01	44.55
HORVU2Hr1G074130.1	Barley	plastid	52.81	41.7
VIT_04s0044g00870.t01	Wine grape	cytosol	40.59	40.29
VIT_18s0166g00190.t01	Wine grape	plasma membrane	36.92	37.75
KRH53869	Soybean	cytosol	37.9	37.17
KRH43397	Soybean	cytosol	37.41	36.6
CDX92262	Canola	cytosol	35.7	35.35
KRH59546	Soybean	cytosol	35.94	35.17
Bra022347.1-P	Field mustard	cytosol	35.7	34.43
Bra024318.1-P	Field mustard	cytosol	35.21	34.37
CDX82332	Canola	cytosol	35.45	34.2
Bra001717.1-P	Field mustard	cytosol	35.45	34.2
CDY08864	Canola	cytosol	34.96	34.13
CDX84538	Canola	cytosol	34.96	34.13
KRH08734	Soybean	mitochondrion	34.47	34.06
CDX75980	Canola	cytosol	35.21	33.96
KRH36899	Soybean	cytosol	30.81	33.96
CDX99325	Canola	cytosol	34.72	33.57
AT3G18710.1	Thale cress	cytosol	33.99	33.49
KRH70331	Soybean	mitochondrion	33.01	33.17
Solyc11g005700.1.1	Tomato	cytosol	33.99	33.1
AT5G64660.1	Thale cress	cytosol	33.74	32.86
PGSC0003DMT400065698	Potato	cytosol	33.5	32.62
PGSC0003DMT400002079	Potato	cytosol	33.01	32.3
Bra037568.1-P	Field mustard	cytosol	32.52	32.2
AT5G09800.1	Thale cress	cytosol	32.03	32.03
CDY71041	Canola	cytosol	32.27	31.96
Solyc04g071030.1.1	Tomato	cytosol	33.01	31.62
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	24.94	29.57
GSMUA_Achr7P18640_001	Banana	mitochondrion	25.43	27.44
GSMUA_Achr7P03220_001	Banana	cytosol	20.78	27.42
GSMUA_Achr1P13220_001	Banana	cytosol	26.41	27.27
GSMUA_Achr6P02470_001	Banana	mitochondrion	24.94	26.84
GSMUA_Achr6P25670_001	Banana	cytosol	27.63	26.4
GSMUA_Achr6P11310_001	Banana	cytosol	24.45	26.32
GSMUA_Achr10P...	Banana	cytosol	22.98	25.75
GSMUA_Achr11P...	Banana	mitochondrion	26.16	25.18
GSMUA_Achr5P01000_001	Banana	cytosol	21.76	25.07
GSMUA_Achr10P...	Banana	cytosol	22.74	24.73
GSMUA_Achr3P02030_001	Banana	plastid	25.18	24.58
GSMUA_Achr11P...	Banana	cytosol	22.25	24.4
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	23.72	24.37
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	23.72	24.19
GSMUA_Achr8P30400_001	Banana	cytosol	21.27	23.71
GSMUA_Achr1P16250_001	Banana	cytosol	22.74	22.85
GSMUA_Achr11P...	Banana	cytosol	20.29	22.68
GSMUA_Achr3P18060_001	Banana	cytosol	20.78	22.31
GSMUA_Achr3P25750_001	Banana	cytosol	22.98	21.91
GSMUA_Achr5P13860_001	Banana	cytosol	16.14	21.78
GSMUA_Achr8P04940_001	Banana	cytosol	22.98	21.76
GSMUA_Achr2P08620_001	Banana	cytosol	22.98	21.66
GSMUA_Achr4P07400_001	Banana	cytosol	22.98	21.66
GSMUA_Achr9P29630_001	Banana	cytosol	22.0	14.56

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G18140_001	EnsemblPlants:GSMUA_Achr6P18140_001
EnsemblPlants:GSMUA_Achr6T18140_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0T812	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF12	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000294F21E	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Putative U-box domain-containing protein 27 [Source:GMGC_GENE;Acc:GSMUA_Achr6G18140_001]

Coordinates

chr6:-:12201719..12203017

Molecular Weight (calculated)

43258.6 Da

IEP (calculated)

5.901

GRAVY (calculated)

0.206

Length

409 amino acids

Sequence
(BLAST)

001: MGRKEERPGQ ALEVKIPSLF RCPISLDVMR SPVSLCTGVT YDRASIQRWL ESGNTTCPAT MLPLPSTDLV PNLTLQRLIH LWSSSAAPAP LVPRRLARDL
101: LHELSSASIA AGDDDPVPPL LKLAEFFSAN DVEPIEKNDL VGVGGCTSVL ASILVRKDSM LESSVAVARV FALILTSDFI DGCNKKIAIA DLVSDIDRSV
201: SALIRVLRDG DSLESQIDAA SVLDAIIAAS DSEFKVLIAE KEELVRELIR LIGPSDEKGA TMDRRAVEAG LGCLAGISAA KRARPRMVRA GVVPALARVL
301: RADPAVAPPA TARRALRVME AAAGCAEGRA AICEDGADAA TAVVGRMVKA GREAVAATEG GATKLLLLMQ TGCSPAAREM AADLLKIFRV SSNCFLAGYD
401: TNTIHITPF

Best Arabidopsis Sequence Match ( AT5G64660.1 )
(BLAST)

001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF

Arabidopsis Description

PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.