Factsheet for GSMUA_Achr8P30400_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...	golgi
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	GSMUA_Achr10P...	AT4G25200.1	21798944
AT3G52450.1	GSMUA_Achr10P...	AT1G07000.1	23170036
AT3G52450.1	GSMUA_Achr10P...	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	78.47	77.21
GSMUA_Achr10P...	Banana	cytosol	60.49	60.82
GSMUA_Achr7P03220_001	Banana	cytosol	49.05	58.06
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	26.16	53.63
GSMUA_Achr5P01000_001	Banana	cytosol	50.41	52.11
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	56.4	50.37
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	56.4	50.37
VIT_06s0009g00320.t01	Wine grape	cytosol	55.04	48.79
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	53.95	48.41
PGSC0003DMT400054949	Potato	cytosol	53.13	48.03
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	52.59	47.54
KRH22633	Soybean	cytosol, nucleus	52.04	47.39
Solyc01g007020.2.1	Tomato	cytosol	52.04	46.81
Solyc01g007010.2.1	Tomato	cytosol	52.04	46.81
PGSC0003DMT400055051	Potato	cytosol	50.14	46.7
GSMUA_Achr11P...	Banana	cytosol	46.32	46.45
KRH68014	Soybean	cytosol	53.13	46.43
PGSC0003DMT400055050	Potato	cytosol	49.59	46.43
PGSC0003DMT400050493	Potato	cytosol	50.95	46.29
Solyc11g068920.1.1	Tomato	cytosol	50.68	46.04
Solyc01g009330.1.1	Tomato	cytosol	53.13	45.77
KRH26691	Soybean	cytosol	48.23	45.74
KRG96257	Soybean	cytosol	52.04	45.58
KRH35744	Soybean	cytosol	52.04	45.58
CDY32070	Canola	cytosol	50.95	45.39
KRG96268	Soybean	cytosol	51.77	45.35
Bra023044.1-P	Field mustard	cytosol	50.41	45.23
Bra017278.1-P	Field mustard	cytosol	50.68	45.15
CDY40422	Canola	cytosol	50.68	45.15
KRH32856	Soybean	cytosol	51.5	45.0
CDX84587	Canola	cytosol	50.14	44.99
KRH72176	Soybean	cytosol	51.23	44.98
CDX79645	Canola	cytosol	49.86	44.85
CDX75084	Canola	cytosol	49.59	44.83
AT2G35930.1	Thale cress	cytosol	50.14	44.77
PGSC0003DMT400054948	Potato	cytosol	34.6	44.56
Bra005309.1-P	Field mustard	cytosol	46.32	43.93
CDX84168	Canola	cytosol	48.23	43.6
KRH25324	Soybean	cytosol	42.78	43.25
PGSC0003DMT400055045	Potato	cytosol	24.8	43.13
PGSC0003DMT400038197	Potato	cytosol	53.13	42.95
Solyc01g007030.2.1	Tomato	cytosol	24.52	42.65
CDX95337	Canola	cytosol	47.41	42.54
CDY23218	Canola	cytosol	45.78	42.42
CDX78096	Canola	cytosol	44.96	42.42
CDY59599	Canola	cytosol	46.87	42.05
PGSC0003DMT400054947	Potato	cytosol	34.6	42.05
Bra012803.1-P	Field mustard	cytosol	47.14	40.9
Bra033430.1-P	Field mustard	cytosol	47.14	40.8
AT3G52450.1	Thale cress	cytosol	47.41	40.0
Bra006925.1-P	Field mustard	cytosol	47.14	39.77
GSMUA_Achr1P16250_001	Banana	cytosol	37.33	33.66
GSMUA_Achr3P18060_001	Banana	cytosol	34.6	33.33
GSMUA_Achr9P29630_001	Banana	cytosol	50.41	29.94
GSMUA_Achr6P02470_001	Banana	mitochondrion	30.52	29.47
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	27.52	29.28
GSMUA_Achr5P13860_001	Banana	cytosol	23.98	29.04
GSMUA_Achr7P18640_001	Banana	mitochondrion	29.16	28.23
GSMUA_Achr10P...	Banana	cytosol	28.61	27.93
GSMUA_Achr6P11310_001	Banana	cytosol	28.61	27.63
GSMUA_Achr11P...	Banana	mitochondrion	31.88	27.53
GSMUA_Achr1P13220_001	Banana	cytosol	28.61	26.52
GSMUA_Achr6P25670_001	Banana	cytosol	30.25	25.93
GSMUA_Achr8P04940_001	Banana	cytosol	29.7	25.23
GSMUA_Achr3P25750_001	Banana	cytosol	29.16	24.94
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	27.25	24.94
GSMUA_Achr2P08620_001	Banana	cytosol	29.16	24.65
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	26.43	24.37
GSMUA_Achr3P02030_001	Banana	plastid	27.52	24.11
GSMUA_Achr8P30420_001	Banana	mitochondrion	17.71	23.81
GSMUA_Achr4P07400_001	Banana	cytosol	27.79	23.5
GSMUA_Achr5P01020_001	Banana	cytosol	25.07	22.94
GSMUA_Achr6P18140_001	Banana	cytosol	23.71	21.27
GSMUA_Achr10P...	Banana	plastid	21.53	20.57

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G30400_001	EnsemblPlants:GSMUA_Achr8P30400_001
EnsemblPlants:GSMUA_Achr8T30400_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0TUZ2	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF11	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002961D65	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Putative E3 ubiquitin-protein ligase PUB23 [Source:GMGC_GENE;Acc:GSMUA_Achr8G30400_001]

Coordinates

chr8:-:32487714..32488958

Molecular Weight (calculated)

40247.2 Da

IEP (calculated)

7.817

GRAVY (calculated)

0.020

Length

367 amino acids

Sequence
(BLAST)

001: MEGAEVPPYF LCPVSLEIMR DPVTLATGIT YDRENIERWI FSHNHEICPV TKQPLPNLDV TPNHTLRRLI QAWCAANASN GVERFPTPRP PVNMTRIAAL
101: LDEARLPQTQ VTALGKLKAI VAESDRNRRC VESSGAVDVL ASIIEKSVSN STDLEEEVCD GVGSSSATDE AFTILCSLQL SDKSLLGLLQ RDDNVIESLT
201: KISYQATKAA LHALGAVCPW GQNRLKAVQA GAVRVLIELL LDEPEKRMCE MILGILHQLC TCAEGRAELI GHAAGIAVVS KKMHRVSQPA SRMAVKILYT
301: VAKSSPSLAV LHEMLQVGAV SKLCLMLQMD CDMKAKEKIQ GILRLHSKVW RNSPCLIPRL RASYPSL

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.