Factsheet for GSMUA_Achr1P16250_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P03220_001	Banana	cytosol	31.94	41.94
GSMUA_Achr10P...	Banana	cytosol	35.87	40.0
GSMUA_Achr5P01000_001	Banana	cytosol	32.92	37.75
GSMUA_Achr8P30400_001	Banana	cytosol	33.66	37.33
GSMUA_Achr11P...	Banana	cytosol	33.42	36.46
GSMUA_Achr11P...	Banana	cytosol	31.7	35.25
GSMUA_Achr3P18060_001	Banana	cytosol	27.52	29.4
GSMUA_Achr8P30420_001	Banana	mitochondrion	19.66	29.3
GSMUA_Achr6P02470_001	Banana	mitochondrion	26.04	27.89
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	22.85	26.96
GSMUA_Achr5P13860_001	Banana	cytosol	19.16	25.74
GSMUA_Achr6P11310_001	Banana	cytosol	23.83	25.53
GSMUA_Achr1P13220_001	Banana	cytosol	24.57	25.25
GSMUA_Achr11P...	Banana	mitochondrion	25.8	24.71
GSMUA_Achr6P25670_001	Banana	cytosol	25.8	24.53
GSMUA_Achr7P18640_001	Banana	mitochondrion	22.36	24.01
GSMUA_Achr10P...	Banana	cytosol	22.11	23.94
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	23.34	23.87
GSMUA_Achr5P01020_001	Banana	cytosol	23.1	23.44
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	22.6	22.94
GSMUA_Achr6P18140_001	Banana	cytosol	22.85	22.74
GSMUA_Achr10P...	Banana	plastid	21.38	22.66
GSMUA_Achr3P02030_001	Banana	plastid	22.11	21.48
GSMUA_Achr3P25750_001	Banana	cytosol	22.11	20.98
GSMUA_Achr8P04940_001	Banana	cytosol	21.87	20.6
GSMUA_Achr4P07400_001	Banana	cytosol	21.62	20.28
GSMUA_Achr2P08620_001	Banana	cytosol	21.62	20.28
GSMUA_Achr9P29630_001	Banana	cytosol	30.47	20.06

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G16250_001	EnsemblPlants:GSMUA_Achr1P16250_001
EnsemblPlants:GSMUA_Achr1T16250_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0S0D3	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF54	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI00029657EF	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Putative E3 ubiquitin-protein ligase PUB23 [Source:GMGC_GENE;Acc:GSMUA_Achr1G16250_001]

Coordinates

chr1:+:12145697..12146920

Molecular Weight (calculated)

43763.5 Da

IEP (calculated)

6.288

GRAVY (calculated)

0.201

Length

407 amino acids

Sequence
(BLAST)

001: MDGLDNVPPF FLCPISLQVM EDPVTISTGV SYDRASIDRW LTVYEHHTCP VTNQHLTDLT LTPNATLLRL IQSWAACSTG CVAPAVAATK PGFDVSEILG
101: DLGDPAARAD GKAKALNTIR SLVLDDDGNA AHMEKAGVTS LVASLIARCE PSEALRNLVD PVVLIDEATS VLHLLKPSPE TLREVSERRN GELIANLASL
201: LQRGSHQARV HAALLLRSIY EVVGDNLKAR IPVDLIEGVV EILKDQNADR ATTMALLAIM IEVLPHGKNR LKAVQAGAVA VTVELLVEES VDRRKCEAML
301: YLLELMCGRA EGRAELVGHP AGVAAVVAKL LSLSSGVTAR AVMVLELVCR YCGGVMEEML QVGGVAKLFM LVQVEGNRRS REMAKGILGN HIKAWSKSPC
401: FPSHCLP

Best Arabidopsis Sequence Match ( AT3G11840.1 )
(BLAST)

001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI

Arabidopsis Description

PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.