Factsheet for GSMUA_Achr5P01000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...	golgi
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	GSMUA_Achr10P...	AT4G25200.1	21798944
AT3G52450.1	GSMUA_Achr10P...	AT1G07000.1	23170036
AT3G52450.1	GSMUA_Achr10P...	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P03220_001	Banana	cytosol	56.34	64.52
HORVU2Hr1G123130.1	Barley	cytosol	8.17	63.04
GSMUA_Achr8P30400_001	Banana	cytosol	52.11	50.41
GSMUA_Achr10P...	Banana	cytosol	51.27	49.86
Solyc01g007030.2.1	Tomato	cytosol	28.45	47.87
GSMUA_Achr11P...	Banana	cytosol	49.86	47.45
PGSC0003DMT400055045	Potato	cytosol	28.17	47.39
PGSC0003DMT400050493	Potato	cytosol	52.96	46.53
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	53.8	46.47
Os01t0865700-00	Rice	plastid	53.24	46.44
Solyc11g068920.1.1	Tomato	cytosol	52.68	46.29
Os04t0686000-01	Rice	cytosol	53.8	46.25
AT2G35930.1	Thale cress	cytosol	53.52	46.23
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	53.52	46.23
KRH26691	Soybean	cytosol	50.14	45.99
KRH22633	Soybean	cytosol, nucleus	52.11	45.91
TraesCS3B01G409400.1	Wheat	cytosol	53.8	45.8
HORVU3Hr1G083500.1	Barley	cytosol	53.24	45.76
TraesCS3A01G376900.1	Wheat	cytosol	53.8	45.69
TraesCS3D01G370000.1	Wheat	cytosol	53.8	45.69
CDY32070	Canola	cytosol	52.96	45.63
CDX79645	Canola	cytosol	52.39	45.59
CDX78096	Canola	cytosol	49.58	45.24
CDX84587	Canola	cytosol	52.11	45.23
CDX75084	Canola	cytosol	51.55	45.07
Bra023044.1-P	Field mustard	cytosol	51.83	44.99
VIT_06s0009g00320.t01	Wine grape	cytosol	52.39	44.93
Bra017278.1-P	Field mustard	cytosol	52.11	44.9
CDY40422	Canola	cytosol	52.11	44.9
CDX84168	Canola	cytosol	51.27	44.83
EES03937	Sorghum	plastid	51.27	44.61
CDY59599	Canola	cytosol	50.99	44.25
CDY23218	Canola	cytosol	49.3	44.19
TraesCS6B01G421400.1	Wheat	cytosol	52.11	44.05
Bra005309.1-P	Field mustard	cytosol	47.89	43.93
EES13136	Sorghum	cytosol	52.68	43.9
EES06927	Sorghum	cytosol	52.39	43.87
OQU85086	Sorghum	cytosol	52.68	43.79
CDX95337	Canola	cytosol	50.42	43.77
TraesCS6D01G367600.1	Wheat	cytosol	52.11	43.74
Zm00001d042738_P001	Maize	cytosol	50.14	43.63
Solyc01g009330.1.1	Tomato	cytosol	52.11	43.43
TraesCS6B01G420600.1	Wheat	cytosol	51.27	43.33
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	49.86	43.28
TraesCS6A01G382300.1	Wheat	cytosol	51.27	43.13
TraesCS6B01G421900.1	Wheat	cytosol	50.99	43.1
TraesCS6D01G367100.1	Wheat	cytosol	50.99	43.1
KRH72176	Soybean	cytosol	50.7	43.06
TraesCS6A01G382800.1	Wheat	cytosol	50.7	42.65
KRH68014	Soybean	cytosol	50.42	42.62
Bra012803.1-P	Field mustard	cytosol	50.7	42.55
KRG96257	Soybean	cytosol	50.14	42.48
KRG96268	Soybean	cytosol	49.86	42.24
KRH35744	Soybean	cytosol	49.86	42.24
KRH32856	Soybean	cytosol	49.86	42.14
PGSC0003DMT400054949	Potato	cytosol	48.17	42.12
Os02t0539200-01	Rice	cytosol	52.39	42.08
GSMUA_Achr11P...	Banana	cytosol	43.38	42.08
Bra033430.1-P	Field mustard	cytosol	50.14	41.98
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	47.89	41.87
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	46.2	41.84
Solyc01g007020.2.1	Tomato	cytosol	47.89	41.67
Bra006925.1-P	Field mustard	cytosol	50.99	41.61
KRH25324	Soybean	cytosol	42.54	41.6
PGSC0003DMT400055051	Potato	cytosol	45.92	41.37
HORVU6Hr1G089560.1	Barley	plastid	52.39	41.24
Solyc01g007010.2.1	Tomato	cytosol	47.32	41.18
HORVU6Hr1G089590.1	Barley	plastid	52.39	41.15
PGSC0003DMT400055050	Potato	cytosol	45.35	41.07
PGSC0003DMT400054947	Potato	cytosol	34.93	41.06
Zm00001d016730_P001	Maize	cytosol	50.42	41.05
AT3G52450.1	Thale cress	cytosol	50.14	40.92
PGSC0003DMT400038197	Potato	cytosol	51.55	40.31
TraesCS2A01G298000.1	Wheat	cytosol	46.2	38.05
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	45.63	37.94
HORVU0Hr1G003810.1	Barley	cytosol	45.92	37.82
Zm00001d003745_P001	Maize	nucleus	47.61	37.72
TraesCS2B01G314500.1	Wheat	cytosol	45.63	37.59
TraesCS2D01G296100.1	Wheat	cytosol	45.63	37.59
TraesCS2B01G601300.1	Wheat	cytosol	45.07	37.47
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	45.07	37.47
KXG26241	Sorghum	cytosol	48.45	37.23
PGSC0003DMT400054948	Potato	cytosol	29.86	37.19
GSMUA_Achr9P29630_001	Banana	cytosol	62.25	35.76
HORVU2Hr1G123050.1	Barley	cytosol	31.55	33.33
GSMUA_Achr1P16250_001	Banana	cytosol	37.75	32.92
GSMUA_Achr3P18060_001	Banana	cytosol	35.21	32.81
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	16.34	32.4
TraesCS6B01G209000.1	Wheat	cytosol	38.31	32.15
GSMUA_Achr10P...	Banana	cytosol	33.52	31.65
TraesCS6D01G167300.1	Wheat	cytosol	38.59	31.64
GSMUA_Achr6P02470_001	Banana	mitochondrion	33.8	31.58
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	38.03	31.18
TraesCS6A01G176800.1	Wheat	cytosol	37.75	31.02
GSMUA_Achr6P11310_001	Banana	cytosol	32.11	30.0
GSMUA_Achr7P18640_001	Banana	mitochondrion	31.83	29.82
Os12t0161100-00	Rice	cytosol	36.34	29.39
GSMUA_Achr11P...	Banana	mitochondrion	34.37	28.71
KXG23010	Sorghum	cytosol	36.62	28.63
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	30.14	26.68
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	25.63	26.38
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	29.01	25.88
GSMUA_Achr5P13860_001	Banana	cytosol	21.97	25.74
GSMUA_Achr3P02030_001	Banana	plastid	29.86	25.3
GSMUA_Achr8P30420_001	Banana	mitochondrion	19.44	25.27
GSMUA_Achr6P25670_001	Banana	cytosol	30.14	25.0
GSMUA_Achr5P01020_001	Banana	cytosol	28.17	24.94
GSMUA_Achr1P13220_001	Banana	cytosol	27.61	24.75
GSMUA_Achr8P04940_001	Banana	cytosol	27.32	22.45
GSMUA_Achr3P25750_001	Banana	cytosol	27.04	22.38
GSMUA_Achr2P08620_001	Banana	cytosol	27.04	22.12
GSMUA_Achr6P18140_001	Banana	cytosol	25.07	21.76
GSMUA_Achr10P...	Banana	plastid	23.38	21.61
GSMUA_Achr4P07400_001	Banana	cytosol	26.2	21.43
Zm00001d023480_P001	Maize	cytosol	32.96	20.93

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G01000_001	EnsemblPlants:GSMUA_Achr5P01000_001
EnsemblPlants:GSMUA_Achr5T01000_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0SUM9	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF11	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002956233	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

Putative E3 ubiquitin-protein ligase PUB23 [Source:GMGC_GENE;Acc:GSMUA_Achr5G01000_001]

Coordinates

chr5:-:585643..586869

Molecular Weight (calculated)

39628.9 Da

IEP (calculated)

8.967

GRAVY (calculated)

0.045

Length

355 amino acids

Sequence
(BLAST)

001: MEPLEIPCYF LCPISLEIMR DPVTLPTGIT FDRDSIERWI LDAKHSTCPV TRRPLPDCEL TPNHTLPRLI QAWCALHSPS AAMAPQSRLT SLRKLKAVVS
101: ESHRNKRACD EALIILQTLE ISQEGLLDLL AKNANIIESL TTILRRSNGQ SRSYATLLLR SLLGVFSPAR SIGLHAELFQ EMVNVLRDRI SHQATKAALH
201: ALVRLCPWGT NRTKAVEAGA VHVLVELLLE DPERRVTELV LAALDRLCGC AEGRTELVRH RAAIPAVSKK ILQVSQLASE KAVRILHTLA RHSPAAELLE
301: EMLQLGVVTK LCLVLRVGCG GKTEEKARQI LRLHSRVWMH SLCLHPHLRL SYPTL

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.