Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85086 | Sorghum | cytosol | 96.93 | 96.25 |
| Zm00001d016730_P001 | Maize | cytosol | 89.39 | 86.93 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 73.35 | 74.05 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 73.35 | 74.05 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 73.11 | 73.81 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 72.88 | 73.57 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 73.35 | 73.52 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 72.88 | 73.22 |
| Os02t0539200-01 | Rice | cytosol | 75.94 | 72.85 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 72.41 | 72.75 |
| HORVU6Hr1G089560.1 | Barley | plastid | 74.29 | 69.84 |
| HORVU6Hr1G089590.1 | Barley | plastid | 74.29 | 69.69 |
| KXG26241 | Sorghum | cytosol | 63.44 | 58.23 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 39.62 | 54.19 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 43.87 | 52.39 |
| Solyc01g007030.2.1 | Tomato | cytosol | 24.76 | 49.76 |
| EES03937 | Sorghum | plastid | 47.41 | 49.26 |
| PGSC0003DMT400055045 | Potato | cytosol | 24.29 | 48.82 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 46.46 | 47.93 |
| CDY40422 | Canola | cytosol | 46.46 | 47.82 |
| Bra017278.1-P | Field mustard | cytosol | 46.46 | 47.82 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 46.23 | 47.69 |
| CDY32070 | Canola | cytosol | 46.23 | 47.57 |
| CDX75084 | Canola | cytosol | 45.52 | 47.54 |
| EES13136 | Sorghum | cytosol | 47.64 | 47.42 |
| AT2G35930.1 | Thale cress | cytosol | 45.75 | 47.2 |
| CDX84168 | Canola | cytosol | 45.05 | 47.04 |
| Bra005309.1-P | Field mustard | cytosol | 42.92 | 47.03 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 45.52 | 46.62 |
| CDX79645 | Canola | cytosol | 44.81 | 46.57 |
| CDX78096 | Canola | cytosol | 42.69 | 46.53 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 44.81 | 46.45 |
| CDX84587 | Canola | cytosol | 44.81 | 46.45 |
| Bra023044.1-P | Field mustard | cytosol | 44.81 | 46.45 |
| KRH68014 | Soybean | cytosol | 45.99 | 46.43 |
| KRH22633 | Soybean | cytosol, nucleus | 43.87 | 46.15 |
| KRH26691 | Soybean | cytosol | 41.98 | 45.99 |
| CDY59599 | Canola | cytosol | 44.34 | 45.97 |
| CDY23218 | Canola | cytosol | 42.92 | 45.96 |
| KRG96257 | Soybean | cytosol | 45.28 | 45.82 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 43.87 | 45.81 |
| KRG96268 | Soybean | cytosol | 45.05 | 45.58 |
| PGSC0003DMT400054949 | Potato | cytosol | 43.63 | 45.57 |
| KRH35744 | Soybean | cytosol | 44.81 | 45.35 |
| Solyc01g007020.2.1 | Tomato | cytosol | 43.63 | 45.34 |
| Solyc11g068920.1.1 | Tomato | cytosol | 43.16 | 45.3 |
| KRH32856 | Soybean | cytosol | 44.81 | 45.24 |
| CDX95337 | Canola | cytosol | 43.63 | 45.23 |
| KRH72176 | Soybean | cytosol | 44.58 | 45.22 |
| Solyc01g007010.2.1 | Tomato | cytosol | 43.4 | 45.1 |
| PGSC0003DMT400050493 | Potato | cytosol | 42.92 | 45.05 |
| PGSC0003DMT400055051 | Potato | cytosol | 41.51 | 44.67 |
| PGSC0003DMT400055050 | Potato | cytosol | 41.27 | 44.64 |
| KRH25324 | Soybean | cytosol | 38.21 | 44.63 |
| Bra006925.1-P | Field mustard | cytosol | 44.58 | 43.45 |
| Bra033430.1-P | Field mustard | cytosol | 43.4 | 43.4 |
| PGSC0003DMT400054947 | Potato | cytosol | 30.9 | 43.38 |
| Solyc01g009330.1.1 | Tomato | cytosol | 43.4 | 43.19 |
| AT3G52450.1 | Thale cress | cytosol | 44.1 | 42.99 |
| Bra012803.1-P | Field mustard | cytosol | 42.69 | 42.79 |
| PGSC0003DMT400054948 | Potato | cytosol | 28.07 | 41.75 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 17.22 | 40.78 |
| PGSC0003DMT400038197 | Potato | cytosol | 43.16 | 40.31 |
| EES11341 | Sorghum | cytosol | 30.66 | 31.55 |
| EES06938 | Sorghum | extracellular | 29.25 | 30.47 |
| KXG23010 | Sorghum | cytosol | 32.55 | 30.4 |
| EES05563 | Sorghum | mitochondrion | 32.08 | 29.44 |
| KXG19704 | Sorghum | mitochondrion | 31.84 | 29.41 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 42.45 | 29.13 |
| OQU81614 | Sorghum | cytosol | 26.89 | 28.64 |
| OQU80253 | Sorghum | mitochondrion | 14.62 | 28.44 |
| EES07426 | Sorghum | cytosol | 28.77 | 28.44 |
| EER92576 | Sorghum | mitochondrion | 30.19 | 28.19 |
| OQU81292 | Sorghum | mitochondrion | 13.68 | 26.98 |
| EES05205 | Sorghum | cytosol | 27.36 | 25.61 |
| OQU81548 | Sorghum | mitochondrion | 26.89 | 25.5 |
| EER95229 | Sorghum | cytosol | 26.89 | 24.84 |
| KXG38738 | Sorghum | plastid | 26.89 | 23.08 |
| KXG22102 | Sorghum | mitochondrion | 23.82 | 22.1 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:8064236 | InterPro:ARM-like | InterPro:ARM-type_fold |
| UniProt:C5XU24 | EnsemblPlants:EES06927 | ProteinID:EES06927 | ProteinID:EES06927.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 |
| PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF62 | SMART:SM00504 | EnsemblPlantsGene:SORBI_3004G169300 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI0001A85BCC | InterPro:Ubox_domain | RefSeq:XP_002453951.1 | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:52042173..52045045
Molecular Weight (calculated)
45762.3 Da
IEP (calculated)
8.434
GRAVY (calculated)
0.054
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVSSSSAAA EVPHYFLCPI SLEVMRDPVT LATGITYDRA SIERWLFADG HATCPVTRRA LAPAEMDATP NHTLRRLIQA WCAAHQVERF PTPRPPLDSC
101: RVAALLDEGR HGGDRQAAAA LREIKAVVAE SERNRRCVEA TPGAVDFLAS LVAKHSSKRA SSQQDAADDF VLDSPTSTSS PAEDALGVLY SLKPSERSLA
201: QILERDADFL DTLACVLRRP SYRSRAYGIL LLKAITAVMT PARLMTVSAD LVQEVVRVVS DRVSSKAVRA ALHVLCRLCP WGRNRVKAVE AGAVATLVEL
301: LLDEGGRRVT ELAVVAIDHL CGCAEGRSEL VAHPAGLAVV SKKVMRVSVV ATESAVRALH AVARHSPTPS VLQDMLAVGV VAKLLLVLQV NAGDRAGIRA
401: KDMLKTHARV WKDSPCLQRD SYPC
101: RVAALLDEGR HGGDRQAAAA LREIKAVVAE SERNRRCVEA TPGAVDFLAS LVAKHSSKRA SSQQDAADDF VLDSPTSTSS PAEDALGVLY SLKPSERSLA
201: QILERDADFL DTLACVLRRP SYRSRAYGIL LLKAITAVMT PARLMTVSAD LVQEVVRVVS DRVSSKAVRA ALHVLCRLCP WGRNRVKAVE AGAVATLVEL
301: LLDEGGRRVT ELAVVAIDHL CGCAEGRSEL VAHPAGLAVV SKKVMRVSVV ATESAVRALH AVARHSPTPS VLQDMLAVGV VAKLLLVLQV NAGDRAGIRA
401: KDMLKTHARV WKDSPCLQRD SYPC
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.