Factsheet for PGSC0003DMT400055049

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400023748
PGSC0003DMT400065456	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	PGSC0003DMT400012249	AT4G25200.1	21798944
AT3G52450.1	PGSC0003DMT400065456	AT1G07000.1	23170036
AT3G52450.1	PGSC0003DMT400065456	AT1G07000.1	23170036
AT3G52450.1	PGSC0003DMT400023748	AT5G49830.2	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054949	Potato	cytosol	94.83	94.83
PGSC0003DMT400054948	Potato	cytosol	66.26	94.39
PGSC0003DMT400055045	Potato	cytosol	49.01	94.31
PGSC0003DMT400055050	Potato	cytosol	90.39	93.62
PGSC0003DMT400055051	Potato	cytosol	90.64	93.4
PGSC0003DMT400054947	Potato	cytosol	69.21	93.05
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	92.61	91.93
Solyc01g007020.2.1	Tomato	cytosol	91.87	91.42
Solyc01g007010.2.1	Tomato	cytosol	91.87	91.42
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	66.26	65.45
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	66.01	65.21
KRH35744	Soybean	cytosol	65.76	63.72
KRH68014	Soybean	cytosol	65.02	62.86
KRG96257	Soybean	cytosol	64.04	62.05
KRG96268	Soybean	cytosol	63.79	61.81
KRH32856	Soybean	cytosol	60.1	58.1
KRH72176	Soybean	cytosol	59.11	57.42
CDY59599	Canola	cytosol	57.14	56.72
CDX84168	Canola	cytosol	56.65	56.65
CDX78096	Canola	cytosol	54.19	56.56
HORVU2Hr1G123130.1	Barley	cytosol	6.4	56.52
CDX95337	Canola	cytosol	56.9	56.48
CDX79645	Canola	cytosol	56.65	56.37
CDY32070	Canola	cytosol	56.9	56.07
CDY40422	Canola	cytosol	56.9	56.07
Bra017278.1-P	Field mustard	cytosol	56.9	56.07
CDX75084	Canola	cytosol	55.91	55.91
Bra023044.1-P	Field mustard	cytosol	56.16	55.75
Bra005309.1-P	Field mustard	cytosol	52.96	55.56
CDX84587	Canola	cytosol	55.66	55.26
AT2G35930.1	Thale cress	cytosol	55.66	54.99
GSMUA_Achr11P...	Banana	cytosol	50.49	54.96
CDY23218	Canola	cytosol	52.96	54.29
GSMUA_Achr7P03220_001	Banana	cytosol	41.38	54.19
Bra012803.1-P	Field mustard	cytosol	56.16	53.9
Bra006925.1-P	Field mustard	cytosol	57.14	53.33
AT3G52450.1	Thale cress	cytosol	56.9	53.1
Bra033430.1-P	Field mustard	cytosol	54.93	52.59
GSMUA_Achr8P30400_001	Banana	cytosol	47.54	52.59
PGSC0003DMT400050493	Potato	cytosol	52.22	52.48
GSMUA_Achr10P...	Banana	cytosol	47.04	52.33
PGSC0003DMT400038197	Potato	cytosol	55.66	49.78
GSMUA_Achr5P01000_001	Banana	cytosol	41.87	47.89
PGSC0003DMT400038196	Potato	cytosol	46.06	44.74
TraesCS6D01G367100.1	Wheat	cytosol	46.06	44.52
Os04t0686000-01	Rice	cytosol	45.07	44.31
OQU85086	Sorghum	cytosol	46.55	44.26
TraesCS6D01G367600.1	Wheat	cytosol	46.06	44.21
EES06927	Sorghum	cytosol	45.81	43.87
TraesCS6B01G421400.1	Wheat	cytosol	45.32	43.81
TraesCS6A01G382300.1	Wheat	cytosol	45.32	43.6
TraesCS6A01G382800.1	Wheat	cytosol	45.32	43.6
TraesCS6B01G421900.1	Wheat	cytosol	45.07	43.57
TraesCS6B01G420600.1	Wheat	cytosol	45.07	43.57
Os02t0539200-01	Rice	cytosol	46.8	42.99
Os01t0865700-00	Rice	plastid	42.12	42.01
EES13136	Sorghum	cytosol	43.84	41.78
TraesCS2B01G314500.1	Wheat	cytosol	44.34	41.76
HORVU0Hr1G003810.1	Barley	cytosol	44.09	41.53
TraesCS2D01G296100.1	Wheat	cytosol	43.84	41.3
TraesCS2A01G298000.1	Wheat	cytosol	43.84	41.3
Zm00001d016730_P001	Maize	cytosol	43.84	40.83
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	39.41	40.82
PGSC0003DMT400015179	Potato	cytosol	40.39	40.69
HORVU6Hr1G089560.1	Barley	plastid	45.07	40.58
TraesCS3B01G409400.1	Wheat	cytosol	41.63	40.53
HORVU6Hr1G089590.1	Barley	plastid	45.07	40.49
TraesCS3D01G370000.1	Wheat	cytosol	41.63	40.43
TraesCS3A01G376900.1	Wheat	cytosol	41.38	40.19
HORVU3Hr1G083500.1	Barley	cytosol	40.64	39.95
EES03937	Sorghum	plastid	39.66	39.46
Zm00001d003745_P001	Maize	nucleus	42.86	38.84
Zm00001d042738_P001	Maize	cytosol	38.67	38.48
KXG26241	Sorghum	cytosol	43.6	38.31
PGSC0003DMT400054946	Potato	cytosol	38.18	36.82
TraesCS2B01G601300.1	Wheat	cytosol	35.71	33.96
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	35.71	33.96
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	35.47	33.72
PGSC0003DMT400073836	Potato	cytosol	32.76	31.74
PGSC0003DMT400004594	Potato	cytosol	31.77	31.7
HORVU2Hr1G123050.1	Barley	cytosol	25.86	31.25
TraesCS6B01G209000.1	Wheat	cytosol	32.27	30.97
TraesCS6A01G176800.1	Wheat	cytosol	32.51	30.56
TraesCS6D01G167300.1	Wheat	cytosol	32.27	30.25
PGSC0003DMT400075778	Potato	mitochondrion	32.76	30.09
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	31.77	29.79
GSMUA_Achr9P29630_001	Banana	cytosol	44.58	29.29
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	31.77	28.6
PGSC0003DMT400066588	Potato	cytosol	29.06	28.43
KXG23010	Sorghum	cytosol	30.54	27.31
Os12t0161100-00	Rice	cytosol	29.06	26.88
PGSC0003DMT400065698	Potato	cytosol	24.63	23.81
PGSC0003DMT400012566	Potato	cytosol	25.86	23.39
Zm00001d023480_P001	Maize	cytosol	28.33	20.57
PGSC0003DMT400002079	Potato	cytosol	20.94	20.33
PGSC0003DMT400060272	Potato	cytosol	20.2	20.3

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102601938	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M1BX97	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400021358	PGSC:PGSC0003DMG400021358
EnsemblPlants:PGSC0003DMT400055049	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF54	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000295EE70	InterPro:Ubox_domain	RefSeq:XP_006348454.1	InterPro:Znf_RING/FYVE/PHD	:

Description

U-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021358]

Coordinates

chr1:+:2894302..2895549

Molecular Weight (calculated)

45328.5 Da

IEP (calculated)

8.862

GRAVY (calculated)

-0.069

Length

406 amino acids

Sequence
(BLAST)

001: MEEIQVPPYF ICPISLEMMK DPVTISTGIT YDRENIEKWI FSAKNNTCPA TKQSLTCIEL TPNVTLRRFI QSWCTINASH GIERFPTPKP PVSKPQIIKL
101: LKEAKSPKMQ MKSLKRLRSI ASENDANKRC MESAGATEFL AFIINNSNEV FEEEGFMSTK DEALSILYQL KLSEQGLRSL IISGNGEFIE SLTRVMQHGS
201: YESRAYAVML MKDMFEVSTP NLLLSLKQEF FIQVVQVLRD EISQKATKAS LQVLVNTCPF GRNKVKAAEA GAIRVLVDLL LDSSEKRSCE LMLILLDQLC
301: QSAEGRAELL NHPGGLAIVS KKILRVSKVG SERAIKILHS ISKFSSTPSV IQEMLSLGVV AKLCLVLQVD CGSKAKERAK EILKFHAKAW TNSPCIPNNL
401: SSSYPF

Best Arabidopsis Sequence Match ( AT3G52450.1 )
(BLAST)

001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA

Arabidopsis Description

PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.