Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G367100.1 | Wheat | cytosol | 93.84 | 94.29 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 93.36 | 93.36 |
| HORVU6Hr1G089560.1 | Barley | plastid | 91.71 | 85.81 |
| HORVU6Hr1G089590.1 | Barley | plastid | 91.71 | 85.62 |
| OQU85086 | Sorghum | cytosol | 74.17 | 73.3 |
| EES06927 | Sorghum | cytosol | 73.22 | 72.88 |
| Os02t0539200-01 | Rice | cytosol | 75.36 | 71.95 |
| Zm00001d016730_P001 | Maize | cytosol | 72.04 | 69.72 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 62.32 | 61.02 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 38.15 | 51.94 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 43.13 | 51.27 |
| PGSC0003DMT400055045 | Potato | cytosol | 24.41 | 48.82 |
| Solyc01g007030.2.1 | Tomato | cytosol | 24.41 | 48.82 |
| CDY32070 | Canola | cytosol | 45.97 | 47.09 |
| CDX84587 | Canola | cytosol | 45.02 | 46.45 |
| Bra023044.1-P | Field mustard | cytosol | 45.02 | 46.45 |
| CDY40422 | Canola | cytosol | 45.26 | 46.36 |
| Bra017278.1-P | Field mustard | cytosol | 45.26 | 46.36 |
| CDX79645 | Canola | cytosol | 44.79 | 46.32 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 45.02 | 46.23 |
| AT2G35930.1 | Thale cress | cytosol | 44.79 | 45.99 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 44.79 | 45.99 |
| CDX75084 | Canola | cytosol | 44.08 | 45.81 |
| CDX84168 | Canola | cytosol | 44.08 | 45.81 |
| KRH68014 | Soybean | cytosol | 45.5 | 45.71 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 44.08 | 45.48 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 43.6 | 45.32 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 44.31 | 45.17 |
| Bra005309.1-P | Field mustard | cytosol | 41.23 | 44.96 |
| PGSC0003DMT400054949 | Potato | cytosol | 43.13 | 44.83 |
| KRH35744 | Soybean | cytosol | 44.31 | 44.63 |
| KRG96257 | Soybean | cytosol | 44.31 | 44.63 |
| Solyc01g007020.2.1 | Tomato | cytosol | 43.13 | 44.61 |
| Solyc11g068920.1.1 | Tomato | cytosol | 42.65 | 44.55 |
| KRH72176 | Soybean | cytosol | 44.08 | 44.5 |
| KRG96268 | Soybean | cytosol | 44.08 | 44.39 |
| CDY23218 | Canola | cytosol | 41.47 | 44.19 |
| KRH22633 | Soybean | cytosol, nucleus | 42.18 | 44.17 |
| PGSC0003DMT400050493 | Potato | cytosol | 42.18 | 44.06 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 43.6 | 44.02 |
| CDX95337 | Canola | cytosol | 42.65 | 44.01 |
| KRH32856 | Soybean | cytosol | 43.6 | 43.81 |
| CDX78096 | Canola | cytosol | 40.28 | 43.7 |
| Solyc01g007010.2.1 | Tomato | cytosol | 42.18 | 43.63 |
| PGSC0003DMT400055050 | Potato | cytosol | 40.52 | 43.62 |
| CDY59599 | Canola | cytosol | 42.18 | 43.52 |
| KRH26691 | Soybean | cytosol | 39.81 | 43.41 |
| PGSC0003DMT400055051 | Potato | cytosol | 40.52 | 43.4 |
| Solyc01g009330.1.1 | Tomato | cytosol | 43.13 | 42.72 |
| PGSC0003DMT400054947 | Potato | cytosol | 30.57 | 42.72 |
| Bra033430.1-P | Field mustard | cytosol | 42.42 | 42.22 |
| PGSC0003DMT400054948 | Potato | cytosol | 28.2 | 41.75 |
| Bra006925.1-P | Field mustard | cytosol | 42.42 | 41.15 |
| KRH25324 | Soybean | cytosol | 35.31 | 41.05 |
| AT3G52450.1 | Thale cress | cytosol | 42.18 | 40.92 |
| Bra012803.1-P | Field mustard | cytosol | 41.0 | 40.9 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 17.3 | 40.78 |
| PGSC0003DMT400038197 | Potato | cytosol | 42.42 | 39.43 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 32.7 | 31.94 |
| TraesCS2A01G450300.1 | Wheat | cytosol | 29.15 | 29.5 |
| TraesCS6A01G263700.1 | Wheat | cytosol | 29.38 | 28.84 |
| TraesCS2A01G307000.1 | Wheat | cytosol | 26.3 | 28.68 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 41.71 | 28.48 |
| TraesCS6A01G256700.1 | Wheat | extracellular | 27.01 | 28.01 |
| TraesCS6A01G312600.1 | Wheat | mitochondrion | 29.86 | 27.69 |
| TraesCS7A01G399900.1 | Wheat | extracellular, vacuole | 24.17 | 26.63 |
| TraesCS4A01G060800.1 | Wheat | cytosol | 27.96 | 25.71 |
| TraesCS2A01G298600.1 | Wheat | cytosol, mitochondrion, plastid | 26.78 | 25.62 |
| TraesCS5A01G088600.1 | Wheat | cytosol | 19.91 | 24.56 |
| TraesCS1A01G274800.1 | Wheat | mitochondrion | 22.51 | 20.97 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF62 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS6A01G382300 | EnsemblPlants:TraesCS6A01G382300.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd16664 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:601396897..601398515
Molecular Weight (calculated)
46181.6 Da
IEP (calculated)
8.494
GRAVY (calculated)
0.040
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMEGPSVEV PPYFLCPISL EIMRDPVTLA TGITYDRCSI ERWLSDGHAT CPITQQKLAE ADREATPNHT LRRLTQAWCA LHAVERFPTP RLPLDAGRVA
101: AIVEEGHGAG RQKELAALRE IKSIIAESDR NRRCVEATPG AVEFLVSVFR NHATMSKSAE DLLELSLDSP SSTSSPEEDA LSVICSLKPS KKSLVRILEK
201: NGDFLDTLVY MLRRPSYRSR CYGILLLKAM VSVMEPARLM AVRTEVVLEV VRLVSDRVST KAVKAALHVL CRLCPWGRNR VKAVEAGAMT VLVELLLDEG
301: GRHPTELAVV AIDHLCGCAE GRSDLVAHPA GLAVVSKKAM RVSLTTTESA VRALHAVARH SPTPAVLQEM LAVGVVAKLL LVLQVDAGER ARAKAKELLK
401: MHARVWKDSP CLQAHLKAHY PC
101: AIVEEGHGAG RQKELAALRE IKSIIAESDR NRRCVEATPG AVEFLVSVFR NHATMSKSAE DLLELSLDSP SSTSSPEEDA LSVICSLKPS KKSLVRILEK
201: NGDFLDTLVY MLRRPSYRSR CYGILLLKAM VSVMEPARLM AVRTEVVLEV VRLVSDRVST KAVKAALHVL CRLCPWGRNR VKAVEAGAMT VLVELLLDEG
301: GRHPTELAVV AIDHLCGCAE GRSDLVAHPA GLAVVSKKAM RVSLTTTESA VRALHAVARH SPTPAVLQEM LAVGVVAKLL LVLQVDAGER ARAKAKELLK
401: MHARVWKDSP CLQAHLKAHY PC
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.