Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400038197 | Potato | cytosol | 94.84 | 88.99 |
| Solyc11g068920.1.1 | Tomato | cytosol | 65.96 | 69.55 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 63.62 | 65.46 |
| KRH22633 | Soybean | cytosol, nucleus | 58.45 | 61.79 |
| KRH26691 | Soybean | cytosol | 55.63 | 61.24 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 6.57 | 60.87 |
| KRH25324 | Soybean | cytosol | 49.53 | 58.13 |
| Solyc01g007030.2.1 | Tomato | cytosol | 28.64 | 57.82 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 41.31 | 56.77 |
| Solyc01g007020.2.1 | Tomato | cytosol | 53.76 | 56.13 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 52.35 | 54.52 |
| Solyc01g007010.2.1 | Tomato | cytosol | 52.11 | 54.41 |
| GSMUA_Achr10P... | Banana | cytosol | 46.01 | 53.7 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 45.77 | 53.13 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 43.43 | 52.11 |
| GSMUA_Achr11P... | Banana | cytosol | 45.07 | 51.47 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 21.6 | 51.4 |
| Os04t0686000-01 | Rice | cytosol | 44.13 | 45.52 |
| Os01t0865700-00 | Rice | plastid | 42.49 | 44.47 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 43.43 | 44.26 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 43.19 | 44.12 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 42.72 | 44.07 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 42.72 | 43.54 |
| Solyc01g009320.1.1 | Tomato | cytosol | 42.72 | 43.54 |
| EES06927 | Sorghum | cytosol | 43.19 | 43.4 |
| OQU85086 | Sorghum | cytosol | 43.43 | 43.33 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 42.72 | 43.13 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 42.49 | 43.1 |
| Solyc06g074140.1.1 | Tomato | cytosol | 42.49 | 43.1 |
| Os02t0539200-01 | Rice | cytosol | 44.6 | 42.99 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 42.02 | 42.62 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 42.25 | 42.55 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 41.78 | 42.38 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 41.78 | 42.38 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 41.78 | 42.18 |
| EES13136 | Sorghum | cytosol | 41.78 | 41.78 |
| Zm00001d042738_P001 | Maize | cytosol | 39.67 | 41.42 |
| EES03937 | Sorghum | plastid | 39.44 | 41.18 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 41.55 | 41.07 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 41.31 | 40.84 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 41.08 | 40.6 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 41.08 | 40.6 |
| HORVU6Hr1G089560.1 | Barley | plastid | 42.72 | 40.35 |
| HORVU6Hr1G089590.1 | Barley | plastid | 42.72 | 40.27 |
| Zm00001d016730_P001 | Maize | cytosol | 41.08 | 40.14 |
| Solyc11g068940.1.1 | Tomato | cytosol | 39.67 | 39.95 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 36.62 | 39.8 |
| Zm00001d003745_P001 | Maize | nucleus | 40.85 | 38.84 |
| KXG26241 | Sorghum | cytosol | 40.38 | 37.23 |
| Solyc01g007050.1.1 | Tomato | cytosol | 36.62 | 37.05 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 35.45 | 35.36 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 35.21 | 35.13 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 34.98 | 34.89 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 31.69 | 31.91 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 32.16 | 31.71 |
| Solyc01g080920.2.1 | Tomato | cytosol | 30.28 | 31.54 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 31.92 | 31.41 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 31.92 | 31.41 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 24.41 | 30.95 |
| Solyc04g008100.1.1 | Tomato | cytosol | 31.92 | 30.77 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 43.43 | 29.94 |
| Solyc01g107980.2.1 | Tomato | cytosol | 28.4 | 29.16 |
| Solyc01g005160.2.1 | Tomato | mitochondrion | 30.52 | 28.89 |
| KXG23010 | Sorghum | cytosol | 30.75 | 28.85 |
| Solyc11g006030.1.1 | Tomato | cytosol | 29.11 | 28.84 |
| Os12t0161100-00 | Rice | cytosol | 28.64 | 27.79 |
| Solyc11g005700.1.1 | Tomato | cytosol | 23.94 | 24.29 |
| Solyc04g077610.2.1 | Tomato | cytosol | 23.47 | 23.87 |
| Solyc04g071030.1.1 | Tomato | cytosol | 22.77 | 22.72 |
| Solyc05g056500.1.1 | Tomato | cytosol | 21.13 | 22.44 |
| Zm00001d023480_P001 | Maize | cytosol | 29.11 | 22.18 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | UniProt:K4ATC9 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF11 |
| SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc01g009330.1 | EnsemblPlants:Solyc01g009330.1.1 | UniParc:UPI0002763526 |
| InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | : | : | : | : |
Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4ATC9]
Coordinates
chr1:-:3515178..3516458
Molecular Weight (calculated)
48080.0 Da
IEP (calculated)
8.201
GRAVY (calculated)
-0.009
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDVEVPNYF LCPISMQLMR DPVTTSTGIT YDRENIEKWL FKCKNTTCPI TKQELLTMDL TPNHTLRRVI QSWCIMNSSH GVERIPSPKP QVTKSYVLKL
101: LKQAMQSQEM QLSCLRSLKS IAHASESNKK CLESCEVVDF LASIIMKKEV AFIQDSELSC DNSQTPLVLE YITTKASDEA LDILFHLNPS DETLKRFVSK
201: DNGDELFLDS LLYFLKCGNC QSRDYAIMLL KSAFNVADPC QLIGVKKEYF KEIFLFLKNK LISQQATKAS LKLLVELCPW GRNRIKAIEV GAISTLIELL
301: LDTIERRSCE LILTILHQLC SCAEGRAELL NHGAGIAIVS KKILRVSQVA SDRGVRILCS ISKFSATCKV LQEMLQVGVV SKLCLVIQVD SCSKTKEKAK
401: EILRLHSRVW RDSSCLPPHL LSSYPS
101: LKQAMQSQEM QLSCLRSLKS IAHASESNKK CLESCEVVDF LASIIMKKEV AFIQDSELSC DNSQTPLVLE YITTKASDEA LDILFHLNPS DETLKRFVSK
201: DNGDELFLDS LLYFLKCGNC QSRDYAIMLL KSAFNVADPC QLIGVKKEYF KEIFLFLKNK LISQQATKAS LKLLVELCPW GRNRIKAIEV GAISTLIELL
301: LDTIERRSCE LILTILHQLC SCAEGRAELL NHGAGIAIVS KKILRVSQVA SDRGVRILCS ISKFSATCKV LQEMLQVGVV SKLCLVIQVD SCSKTKEKAK
401: EILRLHSRVW RDSSCLPPHL LSSYPS
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.