Factsheet for Solyc04g077610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012566	Potato	cytosol	98.09	91.54
VIT_18s0001g08790.t01	Wine grape	cytosol	77.33	71.68
Zm00001d019807_P001	Maize	extracellular	14.32	63.83
GSMUA_Achr2P08620_001	Banana	cytosol	65.39	63.13
GSMUA_Achr8P04940_001	Banana	cytosol	64.68	62.73
KRH52124	Soybean	cytosol	61.58	60.71
KRH61438	Soybean	cytosol	60.62	60.19
GSMUA_Achr3P25750_001	Banana	cytosol	61.58	60.14
KRH05554	Soybean	cytosol	59.43	59.43
KRG88755	Soybean	cytosol	59.9	58.37
EER95229	Sorghum	cytosol	59.19	54.03
Os03t0232600-01	Rice	cytosol	58.95	53.81
HORVU4Hr1G066070.1	Barley	cytosol	58.95	53.7
GSMUA_Achr4P07400_001	Banana	cytosol	55.37	53.46
Zm00001d028294_P001	Maize	cytosol	58.47	53.38
TraesCS4D01G237600.1	Wheat	cytosol	58.0	52.94
TraesCS4B01G236200.1	Wheat	cytosol	58.0	52.94
TraesCS4A01G060800.1	Wheat	cytosol	58.0	52.94
Zm00001d048008_P001	Maize	cytosol	58.0	52.48
Zm00001d000044_P001	Maize	cytosol	25.06	45.45
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	12.65	29.61
Solyc11g068920.1.1	Tomato	cytosol	25.06	25.99
Solyc11g005700.1.1	Tomato	cytosol	25.06	25.0
Solyc01g007020.2.1	Tomato	cytosol	24.11	24.75
Solyc01g007010.2.1	Tomato	cytosol	23.39	24.02
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	23.39	23.96
Solyc01g107980.2.1	Tomato	cytosol	23.63	23.86
Solyc01g009330.1.1	Tomato	cytosol	23.87	23.47
Solyc04g008100.1.1	Tomato	cytosol	24.34	23.08
Solyc04g071030.1.1	Tomato	cytosol	23.39	22.95
Solyc05g056500.1.1	Tomato	cytosol	21.0	21.95
Solyc01g009320.1.1	Tomato	cytosol	21.72	21.77
Solyc01g080920.2.1	Tomato	cytosol	21.24	21.76
Solyc11g006030.1.1	Tomato	cytosol	21.48	20.93
Solyc01g005160.2.1	Tomato	mitochondrion	22.43	20.89
Solyc01g007050.1.1	Tomato	cytosol	20.76	20.67
Solyc11g068940.1.1	Tomato	cytosol	20.53	20.33
Solyc06g074140.1.1	Tomato	cytosol	20.29	20.24
Solyc01g007030.2.1	Tomato	cytosol	9.55	18.96

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K4BUJ8	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF6
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc04g077610.2	EnsemblPlants:Solyc04g077610.2.1	UniParc:UPI0002766662
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4BUJ8]

Coordinates

chr4:-:62559572..62561415

Molecular Weight (calculated)

45777.5 Da

IEP (calculated)

7.156

GRAVY (calculated)

0.111

Length

419 amino acids

Sequence
(BLAST)

001: MPMYVPSRGR VEEFDVGGGG QVLDLETAVK DGILGGGGGV VVHGGAIEKK LSLRKMMEEL DSIDVPSVFI CPISLEPMQD PVTLCTGQTY ERSNILKWFS
101: LGHFTCPTTM QELWDDSITP NSTLHQLIYS WFSQKYLAMK KRSEDVQGRV LEILETLKKV KGEARVQALK ELRQVVTSHD SAKKTVTDNS GVSLITSLLG
201: PFTKHVVASE AIGILVHLDL NSDGKANLMQ PNKISLMVDT LNEGSNDTKI NCMKLLELLM EGKDSECDVL SSLSLFVGLL RIIKDKRHPN GVLSGLRLLK
301: LISSHESLRN SIVGIGAIPQ LVEVLPNLNA ECLELALVIL EALSTLPEGA LALMDCRSTI PNVVKLLMKA GLAAKLLLVI QSGCNPVLKQ RSAELLKLCS
401: LNYSETIFIS KCKLTKTMQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.