Factsheet for Solyc11g068940.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009320.1.1	Tomato	cytosol	66.67	67.46
Solyc06g074140.1.1	Tomato	cytosol	61.94	62.38
VIT_06s0009g00370.t01	Wine grape	cytosol	52.48	54.81
KRH25323	Soybean	cytosol	49.17	51.49
KRG88869	Soybean	cytosol	49.88	50.6
KRH26690	Soybean	cytosol	49.65	49.18
KRH22634	Soybean	cytosol	48.94	49.05
GSMUA_Achr11P...	Banana	cytosol	39.24	45.36
Solyc01g007050.1.1	Tomato	cytosol	42.08	42.28
Solyc01g007030.2.1	Tomato	cytosol	21.04	42.18
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	39.24	40.59
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	17.02	40.22
Solyc01g007020.2.1	Tomato	cytosol	38.3	39.71
Solyc01g009330.1.1	Tomato	cytosol	39.95	39.67
Solyc01g007010.2.1	Tomato	cytosol	38.06	39.46
Solyc11g068920.1.1	Tomato	cytosol	36.41	38.12
Solyc01g080920.2.1	Tomato	cytosol	27.19	28.12
Solyc01g107980.2.1	Tomato	cytosol	26.71	27.23
Solyc04g008100.1.1	Tomato	cytosol	26.95	25.79
Solyc11g006030.1.1	Tomato	cytosol	25.06	24.65
Solyc01g005160.2.1	Tomato	mitochondrion	25.77	24.22
Solyc05g056500.1.1	Tomato	cytosol	21.28	22.44
Solyc11g005700.1.1	Tomato	cytosol	20.57	20.71
Solyc04g077610.2.1	Tomato	cytosol	20.33	20.53
Solyc04g071030.1.1	Tomato	cytosol	20.09	19.91

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K4DA51	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF104
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc11g068940.1	EnsemblPlants:Solyc11g068940.1.1	UniParc:UPI000276A79B
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4DA51]

Coordinates

chr11:-:53492962..53494233

Molecular Weight (calculated)

47818.7 Da

IEP (calculated)

7.660

GRAVY (calculated)

-0.016

Length

423 amino acids

Sequence
(BLAST)

001: MEELDIPQYF LCPISLQIMK DPVTTVTGIT YDRESIEMWL YTAEEEVVTA TCPVTKQYLP KDVELLTPNH MIRRLIQAWC IVNAEKGVDR IPTPKYPMDK
101: SNILRLIRQV NNSNSNSNND QQVCVNALRK MDDLVIENEK NIKCMEEVGA IKAIIGFILK SYKIGKLLIP GLEEALRIFH SIWNPSHEDH KNHVKDNHDL
201: VKAILWILKN ETKNICPGNV VTARAMLVLK DVIEVSTSNL LSGLDSEFFQ ETVHALRKNN HQATRAALQV LIAVSTWGRN KLKIIESGAI FELIELELTN
301: PEKRVSELGF CLLANLCVLA DGRAKFLEHA AGIALVTKRT LRISASIDDN AIQIFGLICK FSATKEVLLE MLRVGGVSKI CMVMQANCEI HLKKKAREIL
401: RSHSHIWCNS PCIQILSFDK TIE

Best Arabidopsis Sequence Match ( AT3G11840.1 )
(BLAST)

001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI

Arabidopsis Description

PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.