Factsheet for Solyc01g080920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004594	Potato	cytosol	98.04	98.53
GSMUA_Achr3P18060_001	Banana	cytosol	46.21	49.61
EES11341	Sorghum	cytosol	42.05	41.75
TraesCS2B01G471900.1	Wheat	cytosol	42.54	41.63
TraesCS2A01G450300.1	Wheat	cytosol	42.3	41.49
TraesCS2D01G449900.1	Wheat	cytosol	42.3	41.39
Zm00001d026040_P001	Maize	cytosol	41.32	41.32
Zm00001d002498_P001	Maize	cytosol	41.56	40.96
Os04t0589700-01	Rice	cytosol	41.08	39.91
TraesCS6A01G263700.1	Wheat	cytosol	40.59	38.6
TraesCS6B01G290700.1	Wheat	cytosol	40.34	38.28
HORVU6Hr1G066870.1	Barley	cytosol	40.1	38.23
Os02t0690600-01	Rice	cytosol	39.61	38.12
TraesCS6D01G251200.1	Wheat	cytosol	40.1	37.96
EES07426	Sorghum	cytosol	39.36	37.53
GSMUA_Achr5P13860_001	Banana	cytosol	27.63	37.29
Zm00001d017671_P001	Maize	cytosol	38.63	37.18
OQU80253	Sorghum	mitochondrion	18.09	33.95
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	14.43	32.96
Solyc01g007010.2.1	Tomato	cytosol	32.03	32.11
OQU81292	Sorghum	mitochondrion	16.87	32.09
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	31.78	31.78
Solyc01g007030.2.1	Tomato	cytosol	16.38	31.75
Solyc11g068920.1.1	Tomato	cytosol	31.05	31.44
Solyc01g007020.2.1	Tomato	cytosol	31.05	31.13
Solyc01g009330.1.1	Tomato	cytosol	31.54	30.28
Solyc06g074140.1.1	Tomato	cytosol	28.12	27.38
Solyc11g068940.1.1	Tomato	cytosol	28.12	27.19
Solyc01g009320.1.1	Tomato	cytosol	27.14	26.55
Solyc01g007050.1.1	Tomato	cytosol	26.16	25.42
Solyc01g005160.2.1	Tomato	mitochondrion	26.89	24.44
Solyc11g006030.1.1	Tomato	cytosol	24.69	23.49
Solyc04g008100.1.1	Tomato	cytosol	25.18	23.3
Solyc01g107980.2.1	Tomato	cytosol	22.25	21.93
Solyc04g071030.1.1	Tomato	cytosol	22.25	21.31
Solyc04g077610.2.1	Tomato	cytosol	21.76	21.24
Solyc05g056500.1.1	Tomato	cytosol	20.78	21.2
Solyc11g005700.1.1	Tomato	cytosol	21.52	20.95

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K4AXY4	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF23
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g080920.2	EnsemblPlants:Solyc01g080920.2.1	UniParc:UPI0002762775
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4AXY4]

Coordinates

chr1:+:80262171..80263791

Molecular Weight (calculated)

46139.0 Da

IEP (calculated)

7.773

GRAVY (calculated)

-0.050

Length

409 amino acids

Sequence
(BLAST)

001: MDFPLHFRCP ISMELMKDPV TISTGVTYER KNIEKWFYTC KKKTCPTTMQ VLHSFDMTPN HTLKRLILAW QNGKSQSQSH DDELSMKHHD ELVSLINTIE
101: SSPFKVSSLK KLKSIVELGD HDVKDDFKKC GGVEVLVRII QQILIESSDF VTFRACEEAL SVLIKLPIVL EEEETINTLL QPGCMKSMAI ILQRGSEEAR
201: FCTVSILQRM MKSDCQWNVV IEDQGIEFFK SLMEIMSDEI CSKASSCALQ VLIDILEKSK KSRLKAIEAG AMCTLIEILP DSSKSKSEKI MYLIKMMCEC
301: ADGRMGFIEH GLGVAAITKK MLNISNIGTK IGVKIISLIC NSHPTDKVLD DLLMYGSVKK LVALLHIGGS STTKERVIKI LKLHGDKWKK NPCFPYELKN
401: YLGLESDSL

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.