Factsheet for Zm00001d026040_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11341	Sorghum	cytosol	92.42	91.75
Zm00001d002498_P001	Maize	cytosol	90.95	89.64
TraesCS2A01G450300.1	Wheat	cytosol	77.26	75.78
Os04t0589700-01	Rice	cytosol	78.0	75.77
TraesCS2B01G471900.1	Wheat	cytosol	76.77	75.12
TraesCS2D01G449900.1	Wheat	cytosol	76.77	75.12
Zm00001d017671_P001	Maize	cytosol	65.53	63.06
GSMUA_Achr3P18060_001	Banana	cytosol	48.17	51.71
PGSC0003DMT400004594	Potato	cytosol	41.56	41.77
GSMUA_Achr5P13860_001	Banana	cytosol	30.81	41.58
Solyc01g080920.2.1	Tomato	cytosol	41.32	41.32
Zm00001d019807_P001	Maize	extracellular	8.31	36.17
Zm00001d042738_P001	Maize	cytosol	33.01	33.09
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	29.1	30.36
Zm00001d016730_P001	Maize	cytosol	29.58	27.75
Zm00001d003745_P001	Maize	nucleus	30.32	27.68
Zm00001d050712_P001	Maize	extracellular, plastid	26.89	26.89
Zm00001d016764_P001	Maize	extracellular	26.65	26.08
Zm00001d017976_P001	Maize	mitochondrion	28.61	25.89
Zm00001d044734_P001	Maize	mitochondrion	27.87	25.79
Zm00001d050689_P001	Maize	cytosol	26.89	25.64
Zm00001d028374_P001	Maize	mitochondrion	27.63	25.28
Zm00001d003624_P001	Maize	cytosol	23.96	24.5
Zm00001d016719_P001	Maize	cytosol	25.67	24.48
Zm00001d030251_P001	Maize	cytosol	25.92	23.87
Zm00001d038280_P001	Maize	cytosol	25.92	23.45
Zm00001d048008_P001	Maize	cytosol	26.41	23.33
Zm00001d028294_P001	Maize	cytosol	26.16	23.31
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	24.45	22.52
Zm00001d023480_P001	Maize	cytosol	27.87	20.39
Zm00001d000044_P001	Maize	cytosol	10.02	17.75

Protein Annotations

Gene3D:1.25.10.10	Gene3D:1.25.10.110	EntrezGene:100280112	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:AQK45372.1
InterPro:ARM-like	InterPro:ARM-type_fold	UniProt:B8A203	EMBL:BT055595	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0016874	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF23	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0001917840	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d026040	EnsemblPlants:Zm00001d026040_P001
EnsemblPlants:Zm00001d026040_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

E3 ubiquitin-protein ligase PUB23

Coordinates

chr10:-:136648713..136650056

Molecular Weight (calculated)

44066.9 Da

IEP (calculated)

8.371

GRAVY (calculated)

0.156

Length

409 amino acids

Sequence
(BLAST)

001: MAMEEPPQLF LCPISMELME DPVTVSTGVT YDRRSIERWF FKYGKTTCPA TMQRLNSFGL TPNHTLKRVI STWLDRASSS SSSTPLRNNL AREKLPSLLA
101: SIEATPFKVT ALKNLRCCMD GDVAAQEDFV AYGGIQMLGR VMTQALAESC AGGDFSAFRT CEEAGAVLAT LPLSDDASVE LVLKPECMKP VVAVVQRGSA
201: ESRLHAMAIL AKISSASGAD RDWTPGVDVE DLVKSLLELL SDGASAKLSS RALDVLLDVM ARSRGARRAK AVEVGAVCVL VELLPDASRR VAERALLLLK
301: RMCKCPEGRL AFADHALAVS AVARTMLRVS GLASRLAVSV LWLVACAVTP AERVLDDMLM SGGVAKLLAL LQVENSASTK EKAAKLLRMH GAFWRQYPCF
401: PTGATPRGC

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.