Factsheet for Zm00001d016764_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	extracellular, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06938	Sorghum	extracellular	89.95	92.38
Zm00001d050712_P001	Maize	extracellular, plastid	88.76	90.71
Os02t0548700-00	Rice	cytosol, extracellular, plastid	83.49	83.69
TraesCS6A01G256700.1	Wheat	extracellular	80.86	83.05
TraesCS6B01G268300.1	Wheat	extracellular	80.62	82.8
TraesCS6D01G237900.1	Wheat	extracellular	80.38	82.56
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	57.89	70.14
GSMUA_Achr1P13220_001	Banana	cytosol	63.4	66.92
GSMUA_Achr6P25670_001	Banana	cytosol	63.16	61.68
KRH50316	Soybean	cytosol, plasma membrane, plastid	52.15	52.66
VIT_03s0063g00180.t01	Wine grape	cytosol	51.91	52.29
PGSC0003DMT400066588	Potato	cytosol	51.91	52.29
Solyc01g107980.2.1	Tomato	cytosol	50.96	51.33
KRH70657	Soybean	cytosol	50.96	51.33
CDX99233	Canola	cytosol, peroxisome, plastid	50.48	50.12
CDY50158	Canola	cytosol	49.28	49.4
Bra038205.1-P	Field mustard	cytosol	49.28	49.4
CDX95458	Canola	cytosol	49.04	49.16
Bra022417.1-P	Field mustard	cytosol	49.28	48.82
Bra022415.1-P	Field mustard	cytosol	49.28	48.82
CDY16513	Canola	cytosol	49.28	48.7
Bra014206.1-P	Field mustard	cytosol	49.28	48.7
CDX92328	Canola	cytosol	49.04	48.46
CDY59286	Canola	cytosol	48.8	48.23
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	48.56	48.22
AT3G19380.1	Thale cress	cytosol, golgi, plastid	48.33	47.98
Zm00001d019807_P001	Maize	extracellular	9.81	43.62
Zm00001d044734_P001	Maize	mitochondrion	32.78	31.0
Zm00001d003624_P001	Maize	cytosol	29.19	30.5
Zm00001d028374_P001	Maize	mitochondrion	32.3	30.2
Zm00001d003745_P001	Maize	nucleus	32.3	30.13
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	27.99	29.85
Zm00001d016730_P001	Maize	cytosol	31.1	29.82
Zm00001d042738_P001	Maize	cytosol	28.71	29.41
Zm00001d050689_P001	Maize	cytosol	29.9	29.14
Zm00001d017976_P001	Maize	mitochondrion	31.1	28.76
Zm00001d016719_P001	Maize	cytosol	28.47	27.74
Zm00001d030251_P001	Maize	cytosol	29.43	27.7
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	28.95	27.25
Zm00001d026040_P001	Maize	cytosol	26.08	26.65
Zm00001d017671_P001	Maize	cytosol	26.08	25.65
Zm00001d002498_P001	Maize	cytosol	25.12	25.3
Zm00001d038280_P001	Maize	cytosol	27.27	25.22
Zm00001d028294_P001	Maize	cytosol	27.51	25.05
Zm00001d048008_P001	Maize	cytosol	27.27	24.62
Zm00001d000044_P001	Maize	cytosol	12.44	22.51
Zm00001d023480_P001	Maize	cytosol	25.6	19.14

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6HA67	ProteinID:AQK71600.1	InterPro:ARM-like
InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0016874
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000221DDF6
InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d016764	EnsemblPlants:Zm00001d016764_P001	EnsemblPlants:Zm00001d016764_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Ubiquitin-protein ligase

Coordinates

chr5:-:175226979..175228235

Molecular Weight (calculated)

42958.7 Da

IEP (calculated)

7.757

GRAVY (calculated)

0.099

Length

418 amino acids

Sequence
(BLAST)

001: MPGSVPLGLC LDTAGVQVPW YFRCPISLEL MRDPVTVSTG QTYDRASIES WVATGNTTCP VTRTALADFT LIPNHTLRRL IQEWCVAHRS MGVERIPTPK
101: QPADPDLVRS LVAQGPGLPA LRRLRALARE SDKNRLVMAT HETRAALVEA AFGSGSGSGA ASEELETEAM AVLALVGLGE AEAAEVVGRE ERVARLGKVL
201: GGGGPLEARV NAGAVVEAVA SASGAEARAA LGGAEGVMDG LVALAEEEKA NNARAVRVGV RALFALCLAK ENRARAVAAG AAAALARRVA EGGAGEPERA
301: LAAVERLCRA EGGRDAVVAG AGGGPAAVAA LVRAMSGRGA EHAAGALAAV VVGAGGSEAL QAEAVRAGAM GRLLLMVQGG CSERAKRKAQ HLLKLLRSAW
401: PSADCVANSD DFLQHYHY

Best Arabidopsis Sequence Match ( AT1G49780.1 )
(BLAST)

001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F

Arabidopsis Description

PUB26U-box domain-containing protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA4]
SUBAcon: [cytoskeleton,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.