CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022415.1-P	Field mustard	cytosol	94.77	94.55
Bra022417.1-P	Field mustard	cytosol	94.77	94.55
CDX92328	Canola	cytosol	94.54	94.09
CDY50158	Canola	cytosol	90.02	90.89
CDX95458	Canola	cytosol	89.31	90.17
AT3G19380.1	Thale cress	cytosol, golgi, plastid	85.27	85.27
CDY16513	Canola	cytosol	79.81	79.43
CDY59286	Canola	cytosol	79.33	78.96
KRH50316	Soybean	cytosol, plasma membrane, plastid	67.22	68.36
Solyc01g107980.2.1	Tomato	cytosol	66.75	67.71
KRH70657	Soybean	cytosol	66.51	67.47
PGSC0003DMT400066588	Potato	cytosol	66.03	66.99
VIT_03s0063g00180.t01	Wine grape	cytosol	65.08	66.02
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	45.13	55.07
EES06938	Sorghum	extracellular	50.12	51.84
Zm00001d050712_P001	Maize	extracellular, plastid	50.36	51.83
Os02t0548700-00	Rice	cytosol, extracellular, plastid	51.07	51.56
GSMUA_Achr1P13220_001	Banana	cytosol	48.46	51.52
TraesCS6D01G237900.1	Wheat	extracellular	49.41	51.11
TraesCS6B01G268300.1	Wheat	extracellular	49.41	51.11
TraesCS6A01G256700.1	Wheat	extracellular	49.41	51.11
Zm00001d016764_P001	Maize	extracellular	50.12	50.48
GSMUA_Achr6P25670_001	Banana	cytosol	49.88	49.07
CDX78096	Canola	cytosol	30.17	32.65
CDX75084	Canola	cytosol	31.12	32.27
CDX95337	Canola	cytosol	31.12	32.03
CDY59599	Canola	cytosol	30.88	31.78
CDX84168	Canola	cytosol	30.4	31.53
CDY32070	Canola	cytosol	30.64	31.31
CDY40422	Canola	cytosol	30.64	31.31
CDX84587	Canola	cytosol	30.4	31.3
CDX79645	Canola	cytosol	30.17	31.13
CDY23218	Canola	cytosol	29.22	31.06
CDY27655	Canola	mitochondrion	30.17	29.0
CDX99694	Canola	mitochondrion	29.69	28.54
CDY50319	Canola	cytosol	25.89	25.53
CDY01063	Canola	cytosol	26.6	25.45
CDX83098	Canola	cytosol	26.6	25.28
CDY53333	Canola	cytosol	26.84	25.28
CDY47911	Canola	cytosol	25.18	25.12
CDY08490	Canola	cytosol	26.37	25.11
CDY67531	Canola	cytosol	26.6	25.06
CDY16432	Canola	cytosol	25.42	25.0
CDY69247	Canola	cytosol	26.13	24.83
CDY53920	Canola	cytosol	25.65	24.77
CDX92262	Canola	cytosol	24.23	24.7
CDY18670	Canola	cytosol	25.89	24.61
CDX82332	Canola	cytosol	24.47	24.29
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	20.9	23.91
CDX99325	Canola	cytosol	23.99	23.88
CDY08864	Canola	cytosol	23.75	23.87
CDX75980	Canola	cytosol	23.99	23.82
CDX73849	Canola	cytosol	26.37	23.77
CDX84538	Canola	cytosol	23.52	23.63
CDX92016	Canola	mitochondrion	20.43	23.37
CDY71041	Canola	cytosol	22.8	23.24
CDY51529	Canola	mitochondrion	20.67	23.2
CDY28714	Canola	mitochondrion	20.43	22.93

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078EIQ5	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDX99233	ProteinID:CDX99233	ProteinID:CDX99233.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00107445001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE4A70	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC05g33480D

Coordinates

chrLK031909:+:400891..402156

Molecular Weight (calculated)

45964.7 Da

IEP (calculated)

7.528

GRAVY (calculated)

0.089

Length

421 amino acids

Sequence
(BLAST)

001: MPRSLEPLDL GIQIPYHFRC PISLELMRDP VTVCTGQTYD RTSIESWVST GTDTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAACGTHV SVRSRAAALR RLRAFARDSE KNRVLIAAHN AKEILIRILF SDESPELVSE ALALLAMFPM TEPGQCESII SDAGRVGFLT
201: RLLFDSSIET RVNAAALIEM VVTGSKTADI KGTVLTSECI FEGVIDLLRN PTVTSSPRRA LKIGVKALFA LCLAKNTRRI AVSSGAPEIL IDRLAAGLDR
301: CDAERALATV ELLCRTAEGC AAFGEHALTV PLLVKTILRV SDRATEYAAG ALLALCTAEE RWRDEAVAAG VVVQLLLMVQ SECTERAKRK AQKLLKLLRD
401: SWPDYSFANS DDFACSEVVP F

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.