Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033430.1-P | Field mustard | cytosol | 99.75 | 93.16 |
| CDX95337 | Canola | cytosol | 95.71 | 92.67 |
| CDX78096 | Canola | cytosol | 88.64 | 90.23 |
| CDY59599 | Canola | cytosol | 91.67 | 88.75 |
| AT3G52450.1 | Thale cress | cytosol | 89.9 | 81.84 |
| CDX79645 | Canola | cytosol | 80.56 | 78.19 |
| CDX75084 | Canola | cytosol | 78.79 | 76.85 |
| CDX84587 | Canola | cytosol | 79.04 | 76.53 |
| CDX84168 | Canola | cytosol | 77.78 | 75.86 |
| CDY40422 | Canola | cytosol | 78.28 | 75.24 |
| CDY32070 | Canola | cytosol | 77.53 | 74.51 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 58.84 | 56.69 |
| KRH68014 | Soybean | cytosol | 60.1 | 56.67 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 6.57 | 56.52 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 58.59 | 56.45 |
| PGSC0003DMT400055045 | Potato | cytosol | 29.8 | 55.92 |
| KRG96257 | Soybean | cytosol | 59.09 | 55.85 |
| KRG96268 | Soybean | cytosol | 58.84 | 55.61 |
| Solyc01g007030.2.1 | Tomato | cytosol | 29.55 | 55.45 |
| KRH35744 | Soybean | cytosol | 58.33 | 55.13 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 42.93 | 54.84 |
| KRH72176 | Soybean | cytosol | 57.32 | 54.31 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 55.56 | 53.79 |
| PGSC0003DMT400054949 | Potato | cytosol | 55.05 | 53.69 |
| KRH32856 | Soybean | cytosol | 56.82 | 53.57 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 54.29 | 52.96 |
| PGSC0003DMT400055050 | Potato | cytosol | 52.02 | 52.55 |
| Solyc01g007020.2.1 | Tomato | cytosol | 54.04 | 52.45 |
| PGSC0003DMT400055051 | Potato | cytosol | 52.02 | 52.28 |
| Solyc01g007010.2.1 | Tomato | cytosol | 53.79 | 52.21 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 23.48 | 51.96 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 44.19 | 49.3 |
| GSMUA_Achr10P... | Banana | cytosol | 44.95 | 48.77 |
| PGSC0003DMT400054948 | Potato | cytosol | 34.85 | 48.42 |
| PGSC0003DMT400054947 | Potato | cytosol | 36.87 | 48.34 |
| GSMUA_Achr11P... | Banana | cytosol | 44.95 | 47.72 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 42.42 | 45.78 |
| EES06927 | Sorghum | cytosol | 45.96 | 42.92 |
| Os04t0686000-01 | Rice | cytosol | 44.7 | 42.86 |
| OQU85086 | Sorghum | cytosol | 45.71 | 42.39 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 44.95 | 42.38 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 45.2 | 42.32 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 44.19 | 41.47 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 43.94 | 41.43 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 43.94 | 41.43 |
| Os02t0539200-01 | Rice | cytosol | 46.21 | 41.4 |
| Os01t0865700-00 | Rice | plastid | 42.42 | 41.28 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 43.69 | 41.19 |
| Zm00001d016730_P001 | Maize | cytosol | 44.95 | 40.83 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 42.93 | 40.77 |
| Zm00001d042738_P001 | Maize | cytosol | 41.92 | 40.69 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 42.42 | 40.68 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 42.93 | 40.67 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 42.93 | 40.67 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 43.18 | 40.52 |
| EES03937 | Sorghum | plastid | 41.67 | 40.44 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 43.69 | 40.14 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 43.69 | 40.14 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 43.69 | 40.14 |
| HORVU6Hr1G089560.1 | Barley | plastid | 45.71 | 40.13 |
| HORVU6Hr1G089590.1 | Barley | plastid | 45.71 | 40.04 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 43.43 | 39.91 |
| EES13136 | Sorghum | cytosol | 42.42 | 39.44 |
| Zm00001d003745_P001 | Maize | nucleus | 43.94 | 38.84 |
| KXG26241 | Sorghum | cytosol | 43.18 | 37.01 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 36.62 | 36.99 |
| CDY47911 | Canola | cytosol | 37.63 | 35.31 |
| CDY53920 | Canola | cytosol | 37.12 | 33.72 |
| CDY67531 | Canola | cytosol | 37.63 | 33.33 |
| CDY08490 | Canola | cytosol | 36.87 | 33.03 |
| CDY01063 | Canola | cytosol | 36.62 | 32.95 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 35.1 | 32.55 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 34.85 | 32.32 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 34.85 | 32.32 |
| CDX73849 | Canola | cytosol | 36.87 | 31.26 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 33.33 | 31.21 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 33.84 | 31.02 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 33.59 | 30.72 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 33.33 | 30.48 |
| CDX99233 | Canola | cytosol, peroxisome, plastid | 31.06 | 29.22 |
| CDX95458 | Canola | cytosol | 30.56 | 29.02 |
| Os12t0161100-00 | Rice | cytosol | 32.07 | 28.93 |
| KXG23010 | Sorghum | cytosol | 33.08 | 28.85 |
| CDX92328 | Canola | cytosol | 30.81 | 28.84 |
| CDY50158 | Canola | cytosol | 30.3 | 28.78 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 24.24 | 28.57 |
| CDY16513 | Canola | cytosol | 30.3 | 28.37 |
| CDY59286 | Canola | cytosol | 30.05 | 28.13 |
| CDY27655 | Canola | mitochondrion | 30.81 | 27.85 |
| CDX99694 | Canola | mitochondrion | 30.05 | 27.17 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 42.17 | 27.02 |
| CDY16432 | Canola | cytosol | 28.79 | 26.64 |
| CDY50319 | Canola | cytosol | 28.54 | 26.46 |
| CDY51529 | Canola | mitochondrion | 23.74 | 25.07 |
| CDY08864 | Canola | cytosol | 26.52 | 25.06 |
| CDX92016 | Canola | mitochondrion | 23.23 | 25.0 |
| CDX84538 | Canola | cytosol | 26.26 | 24.82 |
| CDX74232 | Canola | cytosol, extracellular, mitochondrion, plastid | 22.98 | 24.73 |
| CDX92262 | Canola | cytosol | 25.51 | 24.46 |
| CDY28714 | Canola | mitochondrion | 22.98 | 24.27 |
| CDY71041 | Canola | cytosol | 25.25 | 24.21 |
| CDX75980 | Canola | cytosol | 25.51 | 23.82 |
| CDX82332 | Canola | cytosol | 25.25 | 23.58 |
| CDX99325 | Canola | cytosol | 25.0 | 23.4 |
| CDY18670 | Canola | cytosol | 24.24 | 21.67 |
| CDY69247 | Canola | cytosol | 23.99 | 21.44 |
| CDY53333 | Canola | cytosol | 23.74 | 21.03 |
| CDX83098 | Canola | cytosol | 23.48 | 20.99 |
| Zm00001d023480_P001 | Maize | cytosol | 29.55 | 20.93 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078GF18 | UniProt:A0A078GF18 | InterPro:ARM-like |
| InterPro:ARM-type_fold | EnsemblPlants:CDY23218 | ProteinID:CDY23218 | ProteinID:CDY23218.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00021762001 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF65 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EE8EF0 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
Description
BnaA04g05410DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078GF18]
Coordinates
chrLK032141:-:427280..428554
Molecular Weight (calculated)
44517.6 Da
IEP (calculated)
8.544
GRAVY (calculated)
-0.053
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRDSIEKW LFTGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCSLNAS HGIETIPTPK PPISKSEIER
101: LIKDSSSSHK NQNNTNTRCL EAAEVPEFLA NIISNLNRFD SSRSLMDEAL SLLYHLDASE TARKSLLNNK KVTNIVKTLT KIMQRGIYES RTYATLLLKK
201: ILEVADPMQI ILLERDLFNE VVQILHDQIS HKATKSAMQI LMIICPWGRN RHKAVEAGAV SMIIELLLDE SFSSERRNVE MTMVVLDMLC QCAEGRADFL
301: NHGAAIAVVS KKILRVSQIT SERAVRVLLS VGRFCATPCL LQEMLQLGVV AKLCLVLQVS CGNKTKGKAK ELLQLHARVW RESPCVPRNL YASYPA
101: LIKDSSSSHK NQNNTNTRCL EAAEVPEFLA NIISNLNRFD SSRSLMDEAL SLLYHLDASE TARKSLLNNK KVTNIVKTLT KIMQRGIYES RTYATLLLKK
201: ILEVADPMQI ILLERDLFNE VVQILHDQIS HKATKSAMQI LMIICPWGRN RHKAVEAGAV SMIIELLLDE SFSSERRNVE MTMVVLDMLC QCAEGRADFL
301: NHGAAIAVVS KKILRVSQIT SERAVRVLLS VGRFCATPCL LQEMLQLGVV AKLCLVLQVS CGNKTKGKAK ELLQLHARVW RESPCVPRNL YASYPA
001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
Arabidopsis Description
PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.