Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G382800.1 | Wheat | cytosol | 94.09 | 94.31 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 93.14 | 93.81 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 92.67 | 93.33 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 92.2 | 92.86 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 91.25 | 91.9 |
| HORVU6Hr1G089560.1 | Barley | plastid | 91.25 | 85.59 |
| HORVU6Hr1G089590.1 | Barley | plastid | 91.25 | 85.4 |
| OQU85086 | Sorghum | cytosol | 74.23 | 73.54 |
| EES06927 | Sorghum | cytosol | 73.52 | 73.35 |
| Os02t0539200-01 | Rice | cytosol | 74.47 | 71.27 |
| Zm00001d016730_P001 | Maize | cytosol | 71.39 | 69.27 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 62.17 | 61.02 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 38.3 | 52.26 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 43.74 | 52.11 |
| Solyc01g007030.2.1 | Tomato | cytosol | 24.35 | 48.82 |
| PGSC0003DMT400055045 | Potato | cytosol | 24.35 | 48.82 |
| CDY32070 | Canola | cytosol | 46.34 | 47.57 |
| AT2G35930.1 | Thale cress | cytosol | 46.1 | 47.45 |
| CDY40422 | Canola | cytosol | 45.86 | 47.09 |
| Bra017278.1-P | Field mustard | cytosol | 45.86 | 47.09 |
| CDX79645 | Canola | cytosol | 45.39 | 47.06 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 45.63 | 46.96 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 45.63 | 46.96 |
| CDX84587 | Canola | cytosol | 45.15 | 46.7 |
| Bra023044.1-P | Field mustard | cytosol | 45.15 | 46.7 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 45.15 | 46.7 |
| KRH68014 | Soybean | cytosol | 46.34 | 46.67 |
| CDX84168 | Canola | cytosol | 44.44 | 46.31 |
| CDX75084 | Canola | cytosol | 44.44 | 46.31 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 44.21 | 46.06 |
| KRH72176 | Soybean | cytosol | 45.15 | 45.69 |
| Solyc01g007020.2.1 | Tomato | cytosol | 43.97 | 45.59 |
| KRH35744 | Soybean | cytosol | 45.15 | 45.58 |
| PGSC0003DMT400054949 | Potato | cytosol | 43.74 | 45.57 |
| Bra005309.1-P | Field mustard | cytosol | 41.61 | 45.48 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 44.44 | 45.41 |
| KRG96257 | Soybean | cytosol | 44.92 | 45.35 |
| Solyc11g068920.1.1 | Tomato | cytosol | 43.26 | 45.3 |
| CDY23218 | Canola | cytosol | 42.32 | 45.2 |
| KRG96268 | Soybean | cytosol | 44.68 | 45.11 |
| KRH32856 | Soybean | cytosol | 44.68 | 45.0 |
| KRH22633 | Soybean | cytosol, nucleus | 42.79 | 44.91 |
| PGSC0003DMT400055051 | Potato | cytosol | 41.61 | 44.67 |
| PGSC0003DMT400055050 | Potato | cytosol | 41.37 | 44.64 |
| Solyc01g007010.2.1 | Tomato | cytosol | 43.03 | 44.61 |
| PGSC0003DMT400050493 | Potato | cytosol | 42.55 | 44.55 |
| CDX95337 | Canola | cytosol | 43.03 | 44.5 |
| CDY59599 | Canola | cytosol | 43.03 | 44.5 |
| CDX78096 | Canola | cytosol | 40.9 | 44.47 |
| KRH26691 | Soybean | cytosol | 40.19 | 43.93 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 43.26 | 43.78 |
| Bra033430.1-P | Field mustard | cytosol | 43.5 | 43.4 |
| PGSC0003DMT400054947 | Potato | cytosol | 30.97 | 43.38 |
| PGSC0003DMT400054948 | Potato | cytosol | 29.08 | 43.16 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 18.2 | 43.02 |
| Solyc01g009330.1.1 | Tomato | cytosol | 42.55 | 42.25 |
| AT3G52450.1 | Thale cress | cytosol | 43.26 | 42.07 |
| Bra006925.1-P | Field mustard | cytosol | 43.26 | 42.07 |
| KRH25324 | Soybean | cytosol | 35.93 | 41.87 |
| Bra012803.1-P | Field mustard | cytosol | 41.84 | 41.84 |
| PGSC0003DMT400038197 | Potato | cytosol | 42.08 | 39.21 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 39.48 | 39.11 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 31.91 | 31.18 |
| TraesCS7D01G201600.1 | Wheat | mitochondrion | 32.15 | 30.77 |
| TraesCS2D01G449900.1 | Wheat | cytosol | 28.37 | 28.71 |
| TraesCS6D01G251200.1 | Wheat | cytosol | 29.31 | 28.7 |
| TraesCS2D01G305400.1 | Wheat | cytosol | 26.95 | 28.5 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 41.61 | 28.48 |
| TraesCS6D01G292200.1 | Wheat | mitochondrion | 30.5 | 28.41 |
| TraesCS4D01G229900.1 | Wheat | mitochondrion | 29.55 | 28.41 |
| TraesCS6D01G237900.1 | Wheat | extracellular | 27.19 | 28.26 |
| TraesCS7D01G393700.1 | Wheat | extracellular, vacuole | 23.88 | 26.44 |
| TraesCS4D01G237600.1 | Wheat | cytosol | 27.66 | 25.49 |
| TraesCS2D01G296700.1 | Wheat | cytosol, mitochondrion, plastid | 26.24 | 25.17 |
| TraesCS1D01G274600.1 | Wheat | mitochondrion | 21.51 | 20.09 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF62 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS6D01G367600 | EnsemblPlants:TraesCS6D01G367600.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd16664 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:455311838..455313109
Molecular Weight (calculated)
46289.4 Da
IEP (calculated)
7.617
GRAVY (calculated)
0.036
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGTSVEVPP YFLCPISLEI MRDPVTLATG ITYDRCSIER WLSDGHATCP VTQQKLTDAD REATPNHTLR RLTQAWCALH AVERFPTPRP PLDTCHVAEI
101: VEEGRGAGLQ QELAALREIK AIVDESDRNR RCVEATPGAV EFLVSVVNNY ATNNSASKSA EDLSELSLDS PTSTSSPEEE ALSVICSLKP SKKSLVRILE
201: ENVNFLDTLV CMLRRPSYRS RCYGILLLKA MVSVMEPARL MAVRTEVVLE VVRVVSDRVS AKAVKAALHV LCRLCPWGRN RVKAVEAGAM TVLVELLLDE
301: GGRHPTELAV VAIDHLCGCA EGRSDLVAHP AGLAIMAKKA MRVSLTTTES AVRALHAVAR HSPTPAVLQE MLAVGVVAKL LLVLQVDAGE RARAKAKELL
401: KMHARVWKDS PCLQVHLKAY YPC
101: VEEGRGAGLQ QELAALREIK AIVDESDRNR RCVEATPGAV EFLVSVVNNY ATNNSASKSA EDLSELSLDS PTSTSSPEEE ALSVICSLKP SKKSLVRILE
201: ENVNFLDTLV CMLRRPSYRS RCYGILLLKA MVSVMEPARL MAVRTEVVLE VVRVVSDRVS AKAVKAALHV LCRLCPWGRN RVKAVEAGAM TVLVELLLDE
301: GGRHPTELAV VAIDHLCGCA EGRSDLVAHP AGLAIMAKKA MRVSLTTTES AVRALHAVAR HSPTPAVLQE MLAVGVVAKL LLVLQVDAGE RARAKAKELL
401: KMHARVWKDS PCLQVHLKAY YPC
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.