Factsheet for GSMUA_Achr9P29630_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...	golgi
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	GSMUA_Achr10P...	AT4G25200.1	21798944
AT3G52450.1	GSMUA_Achr10P...	AT1G07000.1	23170036
AT3G52450.1	GSMUA_Achr10P...	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G123130.1	Barley	cytosol	5.02	67.39
GSMUA_Achr7P03220_001	Banana	cytosol	33.33	66.45
GSMUA_Achr5P01000_001	Banana	cytosol	35.76	62.25
GSMUA_Achr10P...	Banana	cytosol	30.74	52.05
GSMUA_Achr8P30400_001	Banana	cytosol	29.94	50.41
GSMUA_Achr11P...	Banana	cytosol	30.26	50.13
GSMUA_Achr11P...	Banana	cytosol	28.48	48.09
VIT_06s0009g00320.t01	Wine grape	cytosol	31.72	47.34
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	31.39	47.2
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	31.23	46.96
Solyc01g007030.2.1	Tomato	cytosol	15.86	46.45
KRH22633	Soybean	cytosol, nucleus	30.26	46.4
Os01t0865700-00	Rice	plastid	30.26	45.95
AT2G35930.1	Thale cress	cytosol	30.26	45.5
PGSC0003DMT400055045	Potato	cytosol	15.53	45.5
KRH26691	Soybean	cytosol	28.48	45.48
CDY32070	Canola	cytosol	30.26	45.39
Bra017278.1-P	Field mustard	cytosol	30.1	45.15
CDY40422	Canola	cytosol	30.1	45.15
CDX79645	Canola	cytosol	29.77	45.1
CDX84168	Canola	cytosol	29.61	45.07
PGSC0003DMT400050493	Potato	cytosol	29.45	45.05
Os04t0686000-01	Rice	cytosol	30.1	45.04
CDX75084	Canola	cytosol	29.45	44.83
Solyc11g068920.1.1	Tomato	cytosol	29.29	44.8
CDX84587	Canola	cytosol	29.61	44.74
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	29.61	44.74
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	29.29	44.58
Bra023044.1-P	Field mustard	cytosol	29.45	44.5
PGSC0003DMT400054949	Potato	cytosol	29.13	44.34
HORVU3Hr1G083500.1	Barley	cytosol	29.61	44.31
KRH68014	Soybean	cytosol	30.1	44.29
TraesCS3D01G370000.1	Wheat	cytosol	29.94	44.26
Bra005309.1-P	Field mustard	cytosol	27.67	44.19
TraesCS3B01G409400.1	Wheat	cytosol	29.77	44.12
CDX78096	Canola	cytosol	27.67	43.96
Solyc01g007010.2.1	Tomato	cytosol	28.96	43.87
Solyc01g007020.2.1	Tomato	cytosol	28.96	43.87
TraesCS3A01G376900.1	Wheat	cytosol	29.61	43.78
PGSC0003DMT400055050	Potato	cytosol	27.67	43.62
KRH32856	Soybean	cytosol	29.61	43.57
KRH72176	Soybean	cytosol	29.45	43.54
Solyc01g009330.1.1	Tomato	cytosol	29.94	43.43
PGSC0003DMT400055051	Potato	cytosol	27.51	43.15
EES03937	Sorghum	plastid	28.48	43.14
Zm00001d042738_P001	Maize	cytosol	28.48	43.14
KRH35744	Soybean	cytosol	29.13	42.96
OQU85086	Sorghum	cytosol	29.61	42.86
KRG96257	Soybean	cytosol	28.96	42.72
KRG96268	Soybean	cytosol	28.8	42.48
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	12.3	42.46
EES06927	Sorghum	cytosol	29.13	42.45
CDY59599	Canola	cytosol	27.99	42.3
CDY23218	Canola	cytosol	27.02	42.17
CDX95337	Canola	cytosol	27.83	42.05
EES13136	Sorghum	cytosol	28.8	41.78
TraesCS6A01G382300.1	Wheat	cytosol	28.48	41.71
TraesCS6B01G421900.1	Wheat	cytosol	28.32	41.67
TraesCS6D01G367600.1	Wheat	cytosol	28.48	41.61
TraesCS6B01G420600.1	Wheat	cytosol	28.16	41.43
TraesCS6B01G421400.1	Wheat	cytosol	28.16	41.43
TraesCS6D01G367100.1	Wheat	cytosol	27.99	41.19
Os02t0539200-01	Rice	cytosol	29.45	41.18
TraesCS6A01G382800.1	Wheat	cytosol	27.99	41.0
HORVU0Hr1G003810.1	Barley	cytosol	28.48	40.84
TraesCS2A01G298000.1	Wheat	cytosol	28.48	40.84
TraesCS2B01G314500.1	Wheat	cytosol	28.32	40.6
TraesCS2D01G296100.1	Wheat	cytosol	28.16	40.37
Zm00001d016730_P001	Maize	cytosol	28.48	40.37
KRH25324	Soybean	cytosol	23.62	40.22
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	25.4	40.05
PGSC0003DMT400038197	Potato	cytosol	29.29	39.87
Bra033430.1-P	Field mustard	cytosol	27.35	39.86
Bra006925.1-P	Field mustard	cytosol	27.99	39.77
Zm00001d003745_P001	Maize	nucleus	28.64	39.51
Bra012803.1-P	Field mustard	cytosol	27.02	39.48
AT3G52450.1	Thale cress	cytosol	27.67	39.31
HORVU6Hr1G089560.1	Barley	plastid	28.64	39.25
HORVU6Hr1G089590.1	Barley	plastid	28.64	39.16
PGSC0003DMT400054948	Potato	cytosol	17.48	37.89
KXG26241	Sorghum	cytosol	28.32	37.88
TraesCS2B01G601300.1	Wheat	cytosol	25.4	36.77
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	25.4	36.77
PGSC0003DMT400054947	Potato	cytosol	17.8	36.42
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	24.92	36.07
HORVU2Hr1G123050.1	Barley	cytosol	17.64	32.44
TraesCS6B01G209000.1	Wheat	cytosol	22.01	32.15
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	17.8	31.88
GSMUA_Achr3P18060_001	Banana	cytosol	19.26	31.23
TraesCS6D01G167300.1	Wheat	cytosol	21.84	31.18
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	21.68	30.95
TraesCS6A01G176800.1	Wheat	cytosol	21.52	30.79
GSMUA_Achr6P02470_001	Banana	mitochondrion	18.77	30.53
GSMUA_Achr1P16250_001	Banana	cytosol	20.06	30.47
GSMUA_Achr6P11310_001	Banana	cytosol	18.28	29.74
KXG23010	Sorghum	cytosol	21.52	29.3
GSMUA_Achr7P18640_001	Banana	mitochondrion	17.96	29.29
GSMUA_Achr10P...	Banana	cytosol	17.8	29.26
Os12t0161100-00	Rice	cytosol	20.55	28.93
GSMUA_Achr8P30420_001	Banana	mitochondrion	12.46	28.21
GSMUA_Achr1P13220_001	Banana	cytosol	17.96	28.03
GSMUA_Achr6P25670_001	Banana	cytosol	18.61	26.87
GSMUA_Achr11P...	Banana	mitochondrion	18.28	26.59
GSMUA_Achr5P13860_001	Banana	cytosol	12.95	26.4
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	16.34	25.38
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	16.34	25.19
GSMUA_Achr5P01020_001	Banana	cytosol	15.7	24.19
GSMUA_Achr3P02030_001	Banana	plastid	16.02	23.63
GSMUA_Achr2P08620_001	Banana	cytosol	16.18	23.04
GSMUA_Achr8P04940_001	Banana	cytosol	16.02	22.92
GSMUA_Achr3P25750_001	Banana	cytosol	15.86	22.84
GSMUA_Achr4P07400_001	Banana	cytosol	15.7	22.35
GSMUA_Achr6P18140_001	Banana	cytosol	14.56	22.0
Zm00001d023480_P001	Maize	cytosol	19.09	21.11
GSMUA_Achr10P...	Banana	plastid	13.11	21.09

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G29630_001	EnsemblPlants:GSMUA_Achr9P29630_001
EnsemblPlants:GSMUA_Achr9T29630_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:LRAT-like_dom	UniProt:M0U4M0
PFAM:PF04564	PFAM:PF04970	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF11	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002947F55	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Putative E3 ubiquitin-protein ligase PUB23 [Source:GMGC_GENE;Acc:GSMUA_Achr9G29630_001]

Coordinates

chr9:+:33249535..33254061

Molecular Weight (calculated)

67675.0 Da

IEP (calculated)

8.728

GRAVY (calculated)

-0.011

Length

618 amino acids

Sequence
(BLAST)

001: MEGVEVPSYF LCPISLELMR DPVTLTTGIT YDRDSIERWI FDRKQSTCPA TKQPLEDREL TPNHTLRRLI QAWCTLNSSN GVDRIPTPRP PIDKAQIAKL
101: LEEARLPQFR LGSLRELRTI SASACDEALV LLQTLEISEE GLLDLFQEIV NVVRDRISQQ ATKAALHALL RLCLYGKSRV KAVEAGAVHA LVELLLESPQ
201: KRVCELALAG LDWLCGCADG RAELVRHRAA IPAVSKKILR VSQLASEKAV RILHSVARHS ATAAVLQEMM NVGVVSKLCL VLQVGCGGKM EEKAREILKL
301: HSRVWKDSPC LSPLYSSTYP MSYWGNEESP SKAAKAGTSE LFSVPHFSDR RPRSRSRSTW GNMGLLSNRI GKASLKPGDH IYSWRTAYIY AHHGIYVGDD
401: KVIHFTRGRG EEVGTGTVLD VFLSSSGPHR APCSTCTNQA LESRGVMSSC LNCFLAGGVL YRFEYGVSPA LFIAKARGGT CTLAVSDPSE MVVHRAKYLL
501: NNGFRCYSVF KTNCEDFAIY CKTGILVAER GVVGQSGQAI SIIGGPLAAV LSTPFRLITT NVYGMAVTAV GVYCASRYIA DIGNRIDVVR IPVEELTAGL
601: ASGRVRIAEG ANHLTLPQ

Best Arabidopsis Sequence Match ( AT5G06370.1 )
(BLAST)

001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS

Arabidopsis Description

AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.