Factsheet for GSMUA_Achr5P01020_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P06810_001
GSMUA_Achr6P18810_001
GSMUA_Achr7P23200_001
GSMUA_Achr8P08140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	GSMUA_Achr11P...	AT4G33940.1	21798944
AT5G09800.1	GSMUA_Achr6P18810_001	AT4G33940.1	21798944
AT5G09800.1	GSMUA_Achr7P23200_001	AT4G33940.1	21798944
AT5G09800.1	GSMUA_Achr8P08140_001	AT4G33940.1	21798944
AT5G09800.1	GSMUA_Achr3P06810_001	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P30420_001	Banana	mitochondrion	36.16	53.11
GSMUA_Achr6P18140_001	Banana	cytosol	50.62	49.63
GSMUA_Achr10P...	Banana	plastid	45.39	47.4
KXG22102	Sorghum	mitochondrion	44.39	38.95
Zm00001d038280_P001	Maize	cytosol	43.89	38.94
Os05t0439400-01	Rice	plasma membrane	43.89	38.94
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	43.14	38.19
TraesCS1B01G284200.1	Wheat	mitochondrion	43.14	38.19
TraesCS1A01G274800.1	Wheat	mitochondrion	42.64	37.75
TraesCS1D01G274600.1	Wheat	mitochondrion	42.39	37.53
VIT_04s0044g00870.t01	Wine grape	cytosol	38.4	37.38
KRH53869	Soybean	cytosol	38.4	36.93
KRH43397	Soybean	cytosol	36.91	35.41
VIT_18s0166g00190.t01	Wine grape	plasma membrane	35.16	35.25
KRH59546	Soybean	cytosol	36.16	34.69
Bra024318.1-P	Field mustard	cytosol	36.16	34.61
CDY08864	Canola	cytosol	35.91	34.37
CDX84538	Canola	cytosol	35.41	33.89
KRH70331	Soybean	mitochondrion	34.16	33.66
PGSC0003DMT400065698	Potato	cytosol	34.91	33.33
Solyc11g005700.1.1	Tomato	cytosol	34.91	33.33
AT5G64660.1	Thale cress	cytosol	34.91	33.33
Bra022347.1-P	Field mustard	cytosol	34.91	33.02
CDX82332	Canola	cytosol	34.91	33.02
CDX75980	Canola	cytosol	34.91	33.02
Bra001717.1-P	Field mustard	cytosol	34.91	33.02
PGSC0003DMT400002079	Potato	cytosol	34.16	32.78
AT3G18710.1	Thale cress	cytosol	33.92	32.77
AT5G09800.1	Thale cress	cytosol	33.42	32.76
CDX92262	Canola	cytosol	33.67	32.69
CDX99325	Canola	cytosol	34.16	32.39
KRH08734	Soybean	mitochondrion	33.42	32.37
CDY71041	Canola	cytosol	33.17	32.2
Bra037568.1-P	Field mustard	cytosol	32.42	31.48
Solyc04g071030.1.1	Tomato	cytosol	32.92	30.91
KRH36899	Soybean	cytosol	28.18	30.46
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	25.19	29.28
GSMUA_Achr1P13220_001	Banana	cytosol	28.18	28.54
GSMUA_Achr7P03220_001	Banana	cytosol	21.95	28.39
GSMUA_Achr5P01000_001	Banana	cytosol	24.94	28.17
GSMUA_Achr6P25670_001	Banana	cytosol	27.93	26.17
GSMUA_Achr10P...	Banana	cytosol	23.69	26.03
GSMUA_Achr11P...	Banana	cytosol	24.19	26.01
GSMUA_Achr6P02470_001	Banana	mitochondrion	24.19	25.53
GSMUA_Achr7P18640_001	Banana	mitochondrion	23.94	25.33
GSMUA_Achr8P30400_001	Banana	cytosol	22.94	25.07
GSMUA_Achr11P...	Banana	cytosol	22.69	24.86
GSMUA_Achr6P11310_001	Banana	cytosol	23.19	24.47
GSMUA_Achr11P...	Banana	mitochondrion	25.69	24.24
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	23.69	23.69
GSMUA_Achr10P...	Banana	cytosol	22.19	23.67
GSMUA_Achr8P04940_001	Banana	cytosol	25.19	23.38
GSMUA_Achr2P08620_001	Banana	cytosol	25.19	23.27
GSMUA_Achr1P16250_001	Banana	cytosol	23.44	23.1
GSMUA_Achr3P25750_001	Banana	cytosol	24.69	23.08
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	22.69	22.86
GSMUA_Achr5P13860_001	Banana	cytosol	17.21	22.77
GSMUA_Achr3P18060_001	Banana	cytosol	20.7	21.78
GSMUA_Achr4P07400_001	Banana	cytosol	22.69	20.97
GSMUA_Achr3P02030_001	Banana	plastid	21.7	20.76
GSMUA_Achr9P29630_001	Banana	cytosol	24.19	15.7

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G01020_001	EnsemblPlants:GSMUA_Achr5P01020_001
EnsemblPlants:GSMUA_Achr5T01020_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0SUN1	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF106	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002969A02	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Putative U-box domain-containing protein 29 [Source:GMGC_GENE;Acc:GSMUA_Achr5G01020_001]

Coordinates

chr5:+:597533..598908

Molecular Weight (calculated)

42807.8 Da

IEP (calculated)

8.221

GRAVY (calculated)

0.034

Length

401 amino acids

Sequence
(BLAST)

001: MGRRREKGGR VDGLEVKLPS FFRCPISLEV MRSPVSLCTG VTYDRDSIQR WLDSGHRTCP ATRLPLPSPV HLVPNLTLRR LIHLWSSPHL LPPPPPSSSP
101: DDLLLDLRSS SSDPLPLLDR LSAFFSSPAT DDSEKDRLAS SVHFAPALVS RVVDDNAGLE ALRAAVRVLA LVLGMESRRE LAIAALIADL DGSVSALLKV
201: LKSRDGAEEY RIDAATVLES ILSSPSCDSE RRILIVEKAD LFPELVRLID PPDTMDPAAA DAGLRCLLAA AKGRHARAGM ARAGAVPALA RALTAAELPA
301: TTAERALKAM EAAARSTEGR AAGREAAVAV LWAACVAAED RRAREAVAVA RGGAAKILVV MQGGCSPAAA RMARELLRVF KVDAESCSVG YDTKTTHIMP
401: Y

Best Arabidopsis Sequence Match ( AT3G18710.1 )
(BLAST)

001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF

Arabidopsis Description

PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.