Factsheet for PGSC0003DMT400002079

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g071030.1.1	Tomato	cytosol	93.78	91.8
VIT_18s0166g00190.t01	Wine grape	plasma membrane	49.76	52.0
GSMUA_Achr8P30420_001	Banana	mitochondrion	28.95	44.32
KRH08734	Soybean	mitochondrion	43.54	43.96
KRH70331	Soybean	mitochondrion	41.63	42.75
PGSC0003DMT400065698	Potato	cytosol	39.95	39.76
Zm00001d016719_P001	Maize	cytosol	38.04	37.06
OQU81548	Sorghum	mitochondrion	39.0	36.47
Zm00001d050689_P001	Maize	cytosol	37.08	36.13
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	37.8	35.83
GSMUA_Achr10P...	Banana	plastid	32.78	35.68
TraesCS2B01G315100.1	Wheat	cytosol	37.56	35.6
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	37.56	35.6
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	37.8	35.59
Os04t0418500-01	Rice	plastid	38.28	35.48
EES05205	Sorghum	cytosol	37.8	34.88
GSMUA_Achr5P01020_001	Banana	cytosol	32.78	34.16
GSMUA_Achr6P18140_001	Banana	cytosol	32.3	33.01
Os02t0540700-00	Rice	plastid	37.8	31.29
HORVU2Hr1G074130.1	Barley	plastid	37.56	30.31
Os05t0439400-01	Rice	plasma membrane	30.86	28.54
Zm00001d038280_P001	Maize	cytosol	30.38	28.1
KXG22102	Sorghum	mitochondrion	30.14	27.57
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	29.43	27.15
TraesCS1D01G274600.1	Wheat	mitochondrion	29.43	27.15
TraesCS1A01G274800.1	Wheat	mitochondrion	29.19	26.93
TraesCS1B01G284200.1	Wheat	mitochondrion	28.95	26.71
PGSC0003DMT400050493	Potato	cytosol	23.45	24.26
PGSC0003DMT400075778	Potato	mitochondrion	25.6	24.21
PGSC0003DMT400060272	Potato	cytosol	22.73	23.51
PGSC0003DMT400012566	Potato	cytosol	25.12	23.39
PGSC0003DMT400004594	Potato	cytosol	22.01	22.6
PGSC0003DMT400073836	Potato	cytosol	22.49	22.43
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	23.92	22.17
PGSC0003DMT400038197	Potato	cytosol	23.68	21.81
PGSC0003DMT400038196	Potato	cytosol	21.77	21.77
PGSC0003DMT400066588	Potato	cytosol	21.29	21.45
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	20.33	20.94
PGSC0003DMT400054949	Potato	cytosol	20.1	20.69
PGSC0003DMT400015179	Potato	cytosol	19.62	20.35
PGSC0003DMT400055050	Potato	cytosol	18.42	19.64
PGSC0003DMT400054948	Potato	cytosol	13.16	19.3
PGSC0003DMT400055051	Potato	cytosol	18.18	19.29
PGSC0003DMT400054946	Potato	cytosol	19.38	19.24
PGSC0003DMT400055045	Potato	cytosol	8.61	17.06
PGSC0003DMT400054947	Potato	cytosol	11.0	15.23

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102603918	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M0ZJK6	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400000791	PGSC:PGSC0003DMG400000791
EnsemblPlants:PGSC0003DMT400002079	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF106	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI0002962342	InterPro:Ubox_domain	RefSeq:XP_006362813.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Photoperiod responsive protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000791]

Coordinates

chr4:-:58874191..58875822

Molecular Weight (calculated)

46064.1 Da

IEP (calculated)

8.592

GRAVY (calculated)

0.042

Length

418 amino acids

Sequence
(BLAST)

001: MVRNRREELY VTVPSLFRCP ISMDVMKSPV SLCTGVTYDR SSIQTWLSQG HNTCPATMQI LPSTDFTPNL TLRRLINVWI QHQPASSPGS TTPSSSSVTK
101: SEVVEIVKSL NGEVDRLSSL AKIVEFVKCS GENRRFFVNL SDAIVSVVGV LVDCDVVEVC EAVVAVLDLV VSENEVKEQL NKEILKSDRK FLPKFLLILR
201: KGKLSSRIQT ARILEFIALD ADSQRKMVEE QGLLYELHVF TSTETNRFAI EAGLSTLIAV STTRPAKKEL VRFGIVQTIG KILSGSETAR AVVEKSLKLL
301: ETVATCTEGR SAIGKGEECL SVIVTRLMKS SKAATEHGVT VLWSVCCLFR DTEAREVVGK ANGLTKVLLV MQSDCSAGVR QMCGELVKAL RVVNNKDKNY
401: SKSCLASYDT KTTHIMPY

Best Arabidopsis Sequence Match ( AT5G64660.1 )
(BLAST)

001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF

Arabidopsis Description

PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.