Factsheet for PGSC0003DMT400004594

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g080920.2.1	Tomato	cytosol	98.53	98.04
GSMUA_Achr3P18060_001	Banana	cytosol	46.19	49.34
EES11341	Sorghum	cytosol	42.51	41.99
TraesCS2B01G471900.1	Wheat	cytosol	42.75	41.63
Zm00001d026040_P001	Maize	cytosol	41.77	41.56
TraesCS2A01G450300.1	Wheat	cytosol	42.51	41.49
TraesCS2D01G449900.1	Wheat	cytosol	42.51	41.39
Zm00001d002498_P001	Maize	cytosol	42.01	41.2
Os04t0589700-01	Rice	cytosol	41.52	40.14
TraesCS6A01G263700.1	Wheat	cytosol	41.03	38.84
TraesCS6B01G290700.1	Wheat	cytosol	40.79	38.52
HORVU6Hr1G066870.1	Barley	cytosol	40.54	38.46
Os02t0690600-01	Rice	cytosol	40.05	38.35
TraesCS6D01G251200.1	Wheat	cytosol	40.54	38.19
EES07426	Sorghum	cytosol	39.8	37.76
Zm00001d017671_P001	Maize	cytosol	39.07	37.41
GSMUA_Achr5P13860_001	Banana	cytosol	27.52	36.96
OQU80253	Sorghum	mitochondrion	18.43	34.4
PGSC0003DMT400050493	Potato	cytosol	32.43	32.67
OQU81292	Sorghum	mitochondrion	17.2	32.56
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	31.7	31.77
PGSC0003DMT400054949	Potato	cytosol	31.7	31.77
PGSC0003DMT400055045	Potato	cytosol	16.46	31.75
PGSC0003DMT400055050	Potato	cytosol	30.22	31.38
PGSC0003DMT400055051	Potato	cytosol	29.98	30.96
PGSC0003DMT400054948	Potato	cytosol	20.64	29.47
PGSC0003DMT400038197	Potato	cytosol	32.68	29.3
PGSC0003DMT400054947	Potato	cytosol	21.62	29.14
PGSC0003DMT400054946	Potato	cytosol	27.52	26.6
PGSC0003DMT400038196	Potato	cytosol	27.03	26.32
PGSC0003DMT400015179	Potato	cytosol	25.31	25.56
PGSC0003DMT400073836	Potato	cytosol	25.8	25.06
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	27.76	25.06
PGSC0003DMT400075778	Potato	mitochondrion	26.04	23.98
PGSC0003DMT400066588	Potato	cytosol	22.6	22.17
PGSC0003DMT400002079	Potato	cytosol	22.6	22.01
PGSC0003DMT400065698	Potato	cytosol	21.87	21.19
PGSC0003DMT400012566	Potato	cytosol	22.85	20.71
PGSC0003DMT400060272	Potato	cytosol	20.39	20.54

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102603086	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M0ZNN8	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400001821	PGSC:PGSC0003DMG400001821
EnsemblPlants:PGSC0003DMT400004594	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF23	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000294EDF4	InterPro:Ubox_domain	RefSeq:XP_006354605.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001821]

Coordinates

chr1:-:67885172..67886585

Molecular Weight (calculated)

45881.9 Da

IEP (calculated)

8.050

GRAVY (calculated)

-0.012

Length

407 amino acids

Sequence
(BLAST)

001: MDFPLHFRCP ISMELMKDPV TISTGVTYER KNIEKWFYTC KKKTCPTTMQ VLHSFDMTPN HTLKRLILAW QNGKSQSQSH DELSMKHDEL VSLINTIESS
101: PFKVSSLKKL KSIVELGDHD VKDDFKKCGG VEVLVRIIQQ ILIESSDFVT FRACEEALSL LIKLPIVLEE EETIKILLQP GCMKSMAIIL QRGSEEARFC
201: TVSILQRIMK SDCQWSVVIE DQGIEFFKSL MEIMSDEICS KASSCALQVL IDILEKSKKS RLKAIEAGAM CTLIEILPDS SKSKSEKIMY LIKMMCECAD
301: GRMGFIEHGL GVAAITKKML NISNIGTKIG VKILSLICNS HPTDKVLDDL LMYGSVKKLV ALLHIGGSST TKERVIKILK LHGDKWKKNP CFPYELKNYL
401: GLESDSL

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.