Factsheet for TraesCS6A01G263700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G290700.1	Wheat	cytosol	98.37	98.14
TraesCS6D01G251200.1	Wheat	cytosol	98.37	97.92
HORVU6Hr1G066870.1	Barley	cytosol	96.74	96.97
EES07426	Sorghum	cytosol	84.19	84.38
Os02t0690600-01	Rice	cytosol	83.26	84.24
Zm00001d017671_P001	Maize	cytosol	82.79	83.76
TraesCS2A01G450300.1	Wheat	cytosol	66.51	68.59
OQU80253	Sorghum	mitochondrion	34.65	68.35
OQU81292	Sorghum	mitochondrion	33.02	66.05
GSMUA_Achr3P18060_001	Banana	cytosol	43.95	49.61
PGSC0003DMT400004594	Potato	cytosol	38.84	41.03
GSMUA_Achr5P13860_001	Banana	cytosol	28.84	40.92
Solyc01g080920.2.1	Tomato	cytosol	38.6	40.59
TraesCS3A01G376900.1	Wheat	cytosol	30.93	31.82
TraesCS6A01G382300.1	Wheat	cytosol	28.84	29.38
TraesCS6A01G382800.1	Wheat	cytosol	28.84	29.38
TraesCS6A01G176800.1	Wheat	cytosol	28.6	28.47
TraesCS2A01G298000.1	Wheat	cytosol	27.91	27.84
TraesCS6A01G312600.1	Wheat	mitochondrion	26.74	25.27
TraesCS6A01G256700.1	Wheat	extracellular	23.72	25.06
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	25.12	24.49
TraesCS2A01G307000.1	Wheat	cytosol	21.86	24.29
TraesCS7A01G399900.1	Wheat	extracellular, vacuole	20.93	23.5
TraesCS4A01G060800.1	Wheat	cytosol	23.95	22.44
TraesCS1A01G274800.1	Wheat	mitochondrion	23.26	22.08
TraesCS5A01G088600.1	Wheat	cytosol	16.98	21.34

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF29	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS6A01G263700	EnsemblPlants:TraesCS6A01G263700.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:486840786..486842078

Molecular Weight (calculated)

46488.5 Da

IEP (calculated)

5.184

GRAVY (calculated)

0.206

Length

430 amino acids

Sequence
(BLAST)

001: MDMDMEEPPH LFLCPISMEL MEEPVTVSTG VTYDRRSIER WLFTYGRATC PATMQPLANL DLTPNHTLAR VISSWLDRGS SSSSSSSSPS TSSLSSPVHE
101: LGTPLTRMLE EERLRSALGD LEQTPFKVTA LKSMRSCMAG DVAMQIIFVA SGGVEAVGRV MAQALAESGA GGDFSAFTVC EEAAAVLAAL PLSDEASAGL
201: VLAPECLRPV MVLLQRGSAE ARLHAMDILT KISSAGAGDH WTAGIDVDDV LKSLLELLSD EVSARLSSRA LNVLLDVVER SPSGRAKAVE VGAVHVLVEL
301: LVVDADDRHV AERILLLLKR LCKCPEGRLA FAEHDLSVAA VARTMLRVSD LATQLAVKVL WLVSMVAQSE KVLEDMVLTG AVAKLLGLLH VESAPSTKQK
401: TVRMVRIHGV FWRQYPCFPT DLKDYLRLLD

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.