Factsheet for HORVU6Hr1G066870.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G290700.1	Wheat	cytosol	98.14	97.68
TraesCS6D01G251200.1	Wheat	cytosol	97.67	96.99
TraesCS6A01G263700.1	Wheat	cytosol	96.97	96.74
Os02t0690600-01	Rice	cytosol	84.15	84.94
Zm00001d017671_P001	Maize	cytosol	83.45	84.24
EES07426	Sorghum	cytosol	84.15	84.15
OQU80253	Sorghum	mitochondrion	34.73	68.35
OQU81292	Sorghum	mitochondrion	33.1	66.05
HORVU2Hr1G123130.1	Barley	cytosol	5.36	50.0
GSMUA_Achr3P18060_001	Banana	cytosol	44.29	49.87
GSMUA_Achr5P13860_001	Banana	cytosol	29.37	41.58
PGSC0003DMT400004594	Potato	cytosol	38.46	40.54
Solyc01g080920.2.1	Tomato	cytosol	38.23	40.1
HORVU3Hr1G083500.1	Barley	cytosol	31.24	32.45
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	28.9	28.64
HORVU4Hr1G064070.1	Barley	mitochondrion	28.21	27.5
HORVU0Hr1G003810.1	Barley	cytosol	27.51	27.38
HORVU6Hr1G089560.1	Barley	plastid	28.21	26.83
HORVU6Hr1G089590.1	Barley	plastid	28.21	26.77
HORVU2Hr1G123050.1	Barley	cytosol	19.35	24.7
HORVU7Hr1G040790.2	Barley	plastid	26.34	23.16
HORVU7Hr1G093780.1	Barley	cytosol, endoplasmic reticulum, extracellular	20.98	23.02
HORVU4Hr1G066070.1	Barley	cytosol	24.48	22.83
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	24.01	22.74
HORVU6Hr1G077120.1	Barley	plastid	25.87	21.68
HORVU2Hr1G074130.1	Barley	plastid	25.41	21.04
HORVU2Hr1G076490.1	Barley	mitochondrion	4.2	20.69

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:HORVU6Hr1G066870	EnsemblPlants:HORVU6Hr1G066870.1
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0YNX1	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF29	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000296E896
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:M0YNX1]

Coordinates

chrchr6H:-:463530777..463532567

Molecular Weight (calculated)

46506.6 Da

IEP (calculated)

4.996

GRAVY (calculated)

0.199

Length

429 amino acids

Sequence
(BLAST)

001: MDMDMEEPPH LFLCPISMEL MEDPVTVSTG VTYDRRSIER WLFSYGRTTC PATMQPLANL DLTPNHTLAR VISSWLDRGS SSSSSSSPST SSLSSPVHEL
101: GTPLTRMLEE ERLRSALGDL EETPFKVTAL KSMRSCMAGD VAMQIIFVAS GGVEAIGRVM AQALAECGTG GDFSAFTVCE EAAAVLAALP LSDEASVGLV
201: LAPECLRPVM ALLQRGSAEA RLHAMDILTK ISNAGAGDHW TTGIDVDDVL KSLLELLSDE VSARLSSRAL DVLLDVVERA PSGRAKAVEV GAVHVLVELL
301: VVDADDRHVA ERILLLLKRL CKCPEGRLAF AEHDLSVAAV ARTMLRVSDL ATQLAVKVLW LVSMVAQSEK VLEDMVLTGA VAKLLGLLHV ESAPSTKQKT
401: VRMVRIHGVF WRQYPCFPTD LKDYLRLLD

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.