Factsheet for HORVU6Hr1G077120.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G342800.1	Wheat	mitochondrion	82.62	93.17
TraesCS6A01G312600.1	Wheat	mitochondrion	81.25	91.43
TraesCS6D01G292200.1	Wheat	mitochondrion	81.05	91.41
Os02t0738200-01	Rice	mitochondrion	65.43	73.46
EES05563	Sorghum	mitochondrion	66.02	73.16
Zm00001d017976_P001	Maize	mitochondrion	63.48	71.9
HORVU7Hr1G040790.2	Barley	plastid	54.88	57.58
HORVU2Hr1G123130.1	Barley	cytosol	5.08	56.52
GSMUA_Achr6P02470_001	Banana	mitochondrion	39.65	53.42
GSMUA_Achr7P18640_001	Banana	mitochondrion	37.5	50.66
GSMUA_Achr10P...	Banana	cytosol	37.11	50.53
HORVU4Hr1G064070.1	Barley	mitochondrion	43.36	50.45
GSMUA_Achr6P11310_001	Banana	cytosol	37.3	50.26
GSMUA_Achr11P...	Banana	mitochondrion	40.82	49.18
VIT_01s0011g06140.t01	Wine grape	mitochondrion	41.21	47.74
KRH48691	Soybean	cytosol	37.7	44.16
GSMUA_Achr3P02030_001	Banana	plastid	36.13	44.15
Solyc01g005160.2.1	Tomato	mitochondrion	38.67	44.0
KRH30918	Soybean	mitochondrion	37.3	43.91
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	38.67	43.9
KRG97963	Soybean	mitochondrion	36.91	43.85
KRH39018	Soybean	mitochondrion	37.3	43.61
Solyc04g008100.1.1	Tomato	cytosol	37.3	43.21
KRH17309	Soybean	cytosol, mitochondrion	36.91	43.05
PGSC0003DMT400075778	Potato	mitochondrion	36.52	42.31
KRH72959	Soybean	cytosol, mitochondrion	36.13	42.24
PGSC0003DMT400073836	Potato	cytosol	31.84	38.9
Solyc11g006030.1.1	Tomato	cytosol	31.84	37.91
Bra039752.1-P	Field mustard	cytosol	29.49	35.78
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	30.08	35.4
CDY16432	Canola	cytosol	29.49	35.28
Bra025442.1-P	Field mustard	mitochondrion	29.88	34.93
CDY50319	Canola	cytosol	29.1	34.89
CDY27655	Canola	mitochondrion	29.49	34.47
AT3G02840.1	Thale cress	mitochondrion	25.39	34.3
CDX99694	Canola	mitochondrion	29.3	34.25
AT1G66160.1	Thale cress	cytosol	28.52	33.87
CDX92016	Canola	mitochondrion	24.22	33.7
CDY51529	Canola	mitochondrion	24.41	33.33
Bra001067.1-P	Field mustard	mitochondrion	23.83	33.15
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	23.83	33.15
CDY28714	Canola	mitochondrion	24.22	33.07
Bra040605.1-P	Field mustard	mitochondrion	23.83	32.53
HORVU3Hr1G083500.1	Barley	cytosol	25.39	31.48
HORVU2Hr1G076490.1	Barley	mitochondrion	5.08	29.89
HORVU0Hr1G003810.1	Barley	cytosol	24.61	29.23
HORVU6Hr1G089560.1	Barley	plastid	24.41	27.72
HORVU6Hr1G089590.1	Barley	plastid	24.41	27.65
HORVU6Hr1G066870.1	Barley	cytosol	21.68	25.87
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	21.68	25.64
HORVU7Hr1G093780.1	Barley	cytosol, endoplasmic reticulum, extracellular	18.95	24.81
HORVU4Hr1G066070.1	Barley	cytosol	21.68	24.13
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	20.9	23.62
HORVU2Hr1G123050.1	Barley	cytosol	14.06	21.43
HORVU2Hr1G074130.1	Barley	plastid	20.7	20.46

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A287USU0	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:HORVU6Hr1G077120
EnsemblPlants:HORVU6Hr1G077120.1	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF107	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000B471631
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287USU0]

Coordinates

chrchr6H:+:528582237..528584114

Molecular Weight (calculated)

55413.2 Da

IEP (calculated)

8.632

GRAVY (calculated)

-0.001

Length

512 amino acids

Sequence
(BLAST)

001: IRTHAHVQHS RPQTIYPTIF TSPPPKRQSS SIVSSGPACL TPTRSPLNFF YGTCRRPPMV TPLPRLRGRA FRGAARGAPA EIPLAVRRTW PQPTLVAAAE
101: SEPAVPTHFL CPISLDMMRD PVTAPTGITY DRESVEGWLE RGHATCPVTG RPLRLEELVP NHATRRVIQE WCVANRGLGV ERVPTPRVPI SAFDASELLA
201: AVSDAARRGD GPRCRELVAR ARAQGKESER NRRCFVSATA ARALSSAFCH LAGQRVVPAT ALEEILAALV VFLPLDEESR RRIATPASLE SVVSILSHGE
301: PVARVSAAVV LREIASSSDR QCLEAMSKTT AIYAALVKLL EKPASPQATK AALVTAYYLA MHTELAASCL VDLGAVQLLL ELLVDADKGT TEKALAVLDC
401: LLLTCKGRDE AYEQALAVPV IVKKMQHVSD MATEFAVSAL WRLCKNFAAE DGGCKAEALQ VGAFQKLLLL LQVGCEGATK ERASELLRLL NGSRDGAECI
501: DSLDFKALKR PF

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.