CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17309	Soybean	cytosol, mitochondrion	93.15	92.94
KRH30918	Soybean	mitochondrion	65.75	66.21
KRG97963	Soybean	mitochondrion	64.84	65.89
KRH39018	Soybean	mitochondrion	50.23	50.23
KRH48691	Soybean	cytosol	50.0	50.11
GSMUA_Achr11P...	Banana	mitochondrion	45.89	47.29
GSMUA_Achr10P...	Banana	cytosol	39.73	46.28
GSMUA_Achr6P11310_001	Banana	cytosol	39.73	45.79
Bra025442.1-P	Field mustard	mitochondrion	45.66	45.66
CDX99694	Canola	mitochondrion	45.66	45.66
PGSC0003DMT400073836	Potato	cytosol	43.61	45.58
CDY27655	Canola	mitochondrion	45.43	45.43
Solyc11g006030.1.1	Tomato	cytosol	44.06	44.88
CDY16432	Canola	cytosol	43.84	44.86
AT1G66160.1	Thale cress	cytosol	44.06	44.78
GSMUA_Achr7P18640_001	Banana	mitochondrion	38.58	44.59
Bra039752.1-P	Field mustard	cytosol	42.92	44.55
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	43.84	44.14
CDY50319	Canola	cytosol	42.92	44.03
TraesCS7D01G201600.1	Wheat	mitochondrion	42.24	41.86
GSMUA_Achr6P02470_001	Banana	mitochondrion	36.3	41.84
Zm00001d017976_P001	Maize	mitochondrion	42.92	41.59
Os06t0248500-00	Rice	mitochondrion	42.92	41.5
TraesCS7B01G105600.1	Wheat	mitochondrion	42.24	41.48
TraesCS6D01G292200.1	Wheat	mitochondrion	42.47	40.97
Os03t0240600-01	Rice	plastid	41.55	40.9
EER92576	Sorghum	mitochondrion	42.24	40.75
Zm00001d028374_P001	Maize	mitochondrion	41.55	40.72
TraesCS6A01G312600.1	Wheat	mitochondrion	42.24	40.66
Os02t0738200-01	Rice	mitochondrion	42.01	40.35
GSMUA_Achr3P02030_001	Banana	plastid	38.58	40.33
TraesCS6B01G342800.1	Wheat	mitochondrion	41.78	40.31
EES05563	Sorghum	mitochondrion	42.47	40.26
TraesCS4D01G229900.1	Wheat	mitochondrion	40.41	40.23
CDX92016	Canola	mitochondrion	33.79	40.22
AT3G02840.1	Thale cress	mitochondrion	34.7	40.11
TraesCS4B01G228700.1	Wheat	mitochondrion	40.18	40.0
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	33.56	39.95
Zm00001d044734_P001	Maize	mitochondrion	40.18	39.82
HORVU4Hr1G064070.1	Barley	mitochondrion	39.95	39.77
KXG19704	Sorghum	mitochondrion	41.55	39.65
Bra001067.1-P	Field mustard	mitochondrion	33.1	39.4
CDY28714	Canola	mitochondrion	33.1	38.67
Bra040605.1-P	Field mustard	mitochondrion	32.88	38.4
CDY51529	Canola	mitochondrion	32.65	38.13
HORVU7Hr1G040790.2	Barley	plastid	42.01	37.7
HORVU6Hr1G077120.1	Barley	plastid	42.24	36.13
KRG96257	Soybean	cytosol	33.33	34.84
KRG96268	Soybean	cytosol	33.1	34.61
KRH35744	Soybean	cytosol	32.88	34.37
Zm00001d030251_P001	Maize	cytosol	34.7	34.23
KRH68014	Soybean	cytosol	32.65	34.05
TraesCS5A01G088600.1	Wheat	cytosol	26.48	33.92
KRH72176	Soybean	cytosol	31.74	33.25
KRH32856	Soybean	cytosol	31.51	32.86
KRH50316	Soybean	cytosol, plasma membrane, plastid	31.05	32.85
KRH70657	Soybean	cytosol	31.05	32.77
KRH26691	Soybean	cytosol	28.77	32.56
KRH22633	Soybean	cytosol, nucleus	29.22	31.76
KRH72180	Soybean	cytosol	16.44	31.03
KXG38738	Sorghum	plastid	34.47	30.57
KRH25324	Soybean	cytosol	22.83	27.55
KRH68013	Soybean	cytosol	18.04	26.69
KRH22634	Soybean	cytosol	24.89	25.83
KRH26690	Soybean	cytosol	25.11	25.76
KRG88869	Soybean	cytosol	24.2	25.42
KRH59546	Soybean	cytosol	23.97	25.12
KRH25323	Soybean	cytosol	23.06	25.0
KRH59579	Soybean	cytosol	21.23	24.87
KRH43397	Soybean	cytosol	23.52	24.64
KRH53869	Soybean	cytosol	23.06	24.22
KRH40934	Soybean	cytosol	20.78	23.45
KRH58142	Soybean	cytosol	23.74	23.42
KRH64033	Soybean	cytosol	21.0	23.41
KRH53906	Soybean	cytosol	21.0	23.35
KRH52124	Soybean	cytosol	22.6	23.29
KRH77156	Soybean	cytosol	23.74	23.16
KRH05554	Soybean	cytosol	22.15	23.15
KRH36899	Soybean	cytosol	19.41	22.91
KRH61438	Soybean	cytosol	21.92	22.75
KRG88755	Soybean	cytosol	22.15	22.56
KRH08734	Soybean	mitochondrion	21.23	22.46
KRH55660	Soybean	cytosol	6.39	22.4
KRH70331	Soybean	mitochondrion	20.09	21.62
KRH28330	Soybean	plastid	23.52	20.04

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100790182	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02001258	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_02G242900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	UniProt:I1JHU5	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:KRH72959
ProteinID:KRH72959	ProteinID:KRH72959.1	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF61
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002337B72	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:43122457..43123773

Molecular Weight (calculated)

48542.6 Da

IEP (calculated)

8.275

GRAVY (calculated)

0.040

Length

438 amino acids

Sequence
(BLAST)

001: MVLSWTKGRV FRRARKGKEL KNFGGDLEID IAIPTHFRCP VTLDMMKDPV TVSTGITYDR DSIEKWIESG NRTCPVTKTE LTTFDMIPNH AIRRMIQDWC
101: VEHRSHGIER IPTPRIPVTP YEVADTCTRI LSAAQHGDEN KCVELVSKIK AWGRESERNK RCIVSNGAAL ALANAFNSFS SRGLLIEKNV VVLDEILGAL
201: VWMRPLSEEG RSVLGSSSSI SCMVWFMNGK QLSTRQNAAL VLKEMHVEAL VKCVGVFEAL INMIKEPVGS GSTKACLSTI FNLVNNKRGV TTCQRFVELG
301: LVDVVLEVLV DAERGVCEKA LGVLDSVCDC KQGVEMAKAN ALTLPLVIKK LLRVSELCSS FAVSVLWKLC DKNIEEGVLI EALQMGVFHK LLVLLQVGCG
401: EGTKEKATEL LKLLNSCRSK AECVHHSSLD FKHLKNPF

Best Arabidopsis Sequence Match ( AT1G66160.1 )
(BLAST)

001: MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F

Arabidopsis Description

PUB20U-box domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.