CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28330	Soybean	plastid	96.88	84.63
KRH58142	Soybean	cytosol	81.51	82.43
VIT_00s0471g00010.t01	Wine grape	cytosol	80.62	80.98
KRH55660	Soybean	cytosol	20.71	74.4
AT3G49810.1	Thale cress	cytosol	74.16	74.33
Bra029975.1-P	Field mustard	cytosol	72.83	73.81
CDX83098	Canola	cytosol	72.61	73.59
CDY53333	Canola	cytosol	73.05	73.38
AT5G65920.1	Thale cress	cytosol	70.16	70.95
CDY69247	Canola	cytosol	66.37	67.27
CDY18670	Canola	cytosol	65.92	66.82
Bra037833.1-P	Field mustard	cytosol	65.92	66.82
KRH05554	Soybean	cytosol	59.91	64.2
KRH52124	Soybean	cytosol	60.58	64.0
Zm00001d019807_P001	Maize	extracellular	13.36	63.83
KRG88755	Soybean	cytosol	60.36	63.02
KRH61438	Soybean	cytosol	59.02	62.8
Os03t0232600-01	Rice	cytosol	60.58	59.26
HORVU4Hr1G066070.1	Barley	cytosol	60.36	58.91
EER95229	Sorghum	cytosol	59.91	58.61
TraesCS4B01G236200.1	Wheat	cytosol	59.69	58.39
TraesCS4A01G060800.1	Wheat	cytosol	59.69	58.39
TraesCS4D01G237600.1	Wheat	cytosol	59.47	58.17
Zm00001d028294_P001	Maize	cytosol	59.24	57.95
Zm00001d048008_P001	Maize	cytosol	59.69	57.88
Zm00001d000044_P001	Maize	cytosol	23.39	45.45
KRH22633	Soybean	cytosol, nucleus	25.17	28.04
KRH72176	Soybean	cytosol	25.39	27.27
KRH26691	Soybean	cytosol	23.39	27.13
KRH32856	Soybean	cytosol	24.72	26.43
KRH59546	Soybean	cytosol	24.28	26.08
KRH43397	Soybean	cytosol	24.28	26.08
KRH68014	Soybean	cytosol	24.28	25.95
KRH68013	Soybean	cytosol	16.93	25.68
KRH08734	Soybean	mitochondrion	23.61	25.6
KRH72180	Soybean	cytosol	13.14	25.43
KRH50316	Soybean	cytosol, plasma membrane, plastid	23.39	25.36
KRH35744	Soybean	cytosol	23.61	25.3
KRH53906	Soybean	cytosol	22.05	25.13
KRH70331	Soybean	mitochondrion	22.72	25.06
KRG96257	Soybean	cytosol	23.39	25.06
KRH64033	Soybean	cytosol	21.83	24.94
KRH39018	Soybean	mitochondrion	24.28	24.89
KRG96268	Soybean	cytosol	23.16	24.82
KRH70657	Soybean	cytosol	22.94	24.82
KRH25324	Soybean	cytosol	19.82	24.52
KRH48691	Soybean	cytosol	23.83	24.49
KRG88869	Soybean	cytosol	22.72	24.46
KRH59579	Soybean	cytosol	20.27	24.33
KRH26690	Soybean	cytosol	22.94	24.12
KRH25323	Soybean	cytosol	21.6	24.01
KRH53869	Soybean	cytosol	22.27	23.98
KRH22634	Soybean	cytosol	22.49	23.93
KRH17309	Soybean	cytosol, mitochondrion	23.39	23.92
KRH72959	Soybean	cytosol, mitochondrion	23.16	23.74
KRH40934	Soybean	cytosol	20.27	23.45
KRH36899	Soybean	cytosol	19.38	23.45
KRG97963	Soybean	mitochondrion	22.05	22.97
KRH30918	Soybean	mitochondrion	20.94	21.61

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100779827	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02000658	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_01G195200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	UniProt:I1J9G1	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:KRH77156
ProteinID:KRH77156	ProteinID:KRH77156.1	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF105
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00023371DA	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:52941334..52944130

Molecular Weight (calculated)

49003.2 Da

IEP (calculated)

5.910

GRAVY (calculated)

0.156

Length

449 amino acids

Sequence
(BLAST)

001: MPMFQPCRKD MVTGYEGGAD GQILDLDTAV KDGVLGGVEG GVVGGGVGEK VDLGKMIEEL ELCEVPSVFI CPISLEPMQD PITLCTGQTY ERSNILKWFN
101: LGHFTCPTTM QELWDDSVTP NTTLYRLIHT WFSQKYLLMK KRSEDVQGRA SELLETLKKV KGQARVQALK EIHQLVASHA TARKAVIDEG GVSVVSSLLG
201: PFTSHAVGSE VIGILVTLTL DSESRKNLLQ PAKVSLMVDI LNEGSIETKI NCTRLIESLI EEKDFRSEVI SSHSLLVGLM RLVKDKRHSN GVCPGLSLLR
301: TICLHKEVRN LLVSIGAVSQ LVELLSGMEP DCTELALCVL DALASVPEGR VALKDCSNTI PIMVKLLMRI SENCTQYALS ILWSVCKLSP DECSSIAVDA
401: GLAAKLLLVI QSGCNPILKQ QSAELLKLCS LNYSDTIFIS KCKLTRTIQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.