Factsheet for VIT_00s0471g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77156	Soybean	cytosol	80.98	80.62
VIT_18s0001g08790.t01	Wine grape	cytosol	79.87	78.98
AT3G49810.1	Thale cress	cytosol	76.96	76.79
Bra029975.1-P	Field mustard	cytosol	76.06	76.75
CDX83098	Canola	cytosol	76.06	76.75
CDY53333	Canola	cytosol	76.73	76.73
KRH58142	Soybean	cytosol	75.39	75.9
AT5G65920.1	Thale cress	cytosol	73.38	73.87
GSMUA_Achr2P08620_001	Banana	cytosol	70.02	72.12
GSMUA_Achr8P04940_001	Banana	cytosol	69.35	71.76
KRH28330	Soybean	plastid	81.43	70.82
CDY69247	Canola	cytosol	70.02	70.65
CDY18670	Canola	cytosol	70.02	70.65
Bra037833.1-P	Field mustard	cytosol	70.02	70.65
GSMUA_Achr3P25750_001	Banana	cytosol	66.67	69.46
Zm00001d019807_P001	Maize	extracellular	13.42	63.83
GSMUA_Achr4P07400_001	Banana	cytosol	61.74	63.59
EER95229	Sorghum	cytosol	61.74	60.13
Os03t0232600-01	Rice	cytosol	61.3	59.7
Zm00001d048008_P001	Maize	cytosol	61.74	59.61
HORVU4Hr1G066070.1	Barley	cytosol	61.07	59.35
Zm00001d028294_P001	Maize	cytosol	60.85	59.26
TraesCS4D01G237600.1	Wheat	cytosol	59.73	58.17
TraesCS4A01G060800.1	Wheat	cytosol	59.73	58.17
TraesCS4B01G236200.1	Wheat	cytosol	59.51	57.95
Zm00001d000044_P001	Maize	cytosol	23.27	45.02
VIT_04s0044g00870.t01	Wine grape	cytosol	24.61	26.7
VIT_03s0063g00180.t01	Wine grape	cytosol	24.61	26.51
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	23.71	25.79
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	23.49	25.55
VIT_06s0009g00320.t01	Wine grape	cytosol	23.49	25.36
VIT_18s0166g00190.t01	Wine grape	plasma membrane	22.37	25.0
VIT_04s0044g01460.t01	Wine grape	cytosol	21.7	24.31
VIT_01s0011g06140.t01	Wine grape	mitochondrion	23.94	24.21
VIT_08s0105g00200.t01	Wine grape	cytosol	21.48	23.65
VIT_06s0009g00370.t01	Wine grape	cytosol	20.81	22.96

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100252523	wikigene:100252523	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:CCB53346	ProteinID:CCB53346.1	UniProt:F6HJQ8	EMBL:FN595797	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EntrezGene:LOC100252523	wikigene:LOC100252523	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849
PANTHER:PTHR22849:SF105	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002109636	InterPro:Ubox_domain
ArrayExpress:VIT_00s0471g00010	EnsemblPlantsGene:VIT_00s0471g00010	EnsemblPlants:VIT_00s0471g00010.t01	unigene:Vvi.12851	RefSeq:XP_002267145	RefSeq:XP_002267145.2
RefSeq:XP_010647073.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HJQ8]

Coordinates

chrUn:+:29866220..29868179

Molecular Weight (calculated)

48993.2 Da

IEP (calculated)

6.663

GRAVY (calculated)

0.115

Length

447 amino acids

Sequence
(BLAST)

001: MPMFQHYQKD GLVGFDGGGD GHVLDLDTAV KDGVLGGGGG GVVGGIAEKL DLKRMIEELD LSEIPSVFIC PISLEPMQDP VTLCTGQTYE RSNILKWFSL
101: GHLTCPTTMQ ELWDDSVTPN KTLYHLIYSW FSQKYLLMKK RSEDVQGRAS ELLETLKKVK GQARVQALKE LHQVVAAHAT ARKTVEEGGV ALISALLGPF
201: TSHAVGSEVI GVLVNLTLDS ESKANLMQPA KISLMVDLLN EGSIETKINS TRLIEMLMEE KDFRSEIVSS HSLLVGLMRL VKDKRHPNGN LPGLTLLRTI
301: CLHKQVRNLF VSIGAIPQLV ELLPALNPDC LESALFILDT LSSLPEGRLA LRDCLNTIPN MVRLLMRVSE SCTQYALAIL WSVCKLAPEE CSSIAVEAGL
401: AAKLLLVIQS GCNPVLKQRS AELLKLCSLN YTDTTFISKC KLTKTIQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.