Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53333 | Canola | cytosol | 93.97 | 94.18 |
| CDX83098 | Canola | cytosol | 93.08 | 94.13 |
| Bra029975.1-P | Field mustard | cytosol | 93.08 | 94.13 |
| AT5G65920.1 | Thale cress | cytosol | 81.47 | 82.21 |
| VIT_00s0471g00010.t01 | Wine grape | cytosol | 76.79 | 76.96 |
| KRH77156 | Soybean | cytosol | 74.33 | 74.16 |
| KRH58142 | Soybean | cytosol | 70.76 | 71.4 |
| GSMUA_Achr8P04940_001 | Banana | cytosol | 66.29 | 68.75 |
| GSMUA_Achr2P08620_001 | Banana | cytosol | 66.07 | 68.2 |
| GSMUA_Achr3P25750_001 | Banana | cytosol | 62.5 | 65.27 |
| KRH28330 | Soybean | plastid | 74.55 | 64.98 |
| Zm00001d019807_P001 | Maize | extracellular | 13.17 | 62.77 |
| GSMUA_Achr4P07400_001 | Banana | cytosol | 58.93 | 60.83 |
| EER95229 | Sorghum | cytosol | 61.83 | 60.35 |
| Zm00001d028294_P001 | Maize | cytosol | 61.38 | 59.91 |
| Os03t0232600-01 | Rice | cytosol | 60.94 | 59.48 |
| HORVU4Hr1G066070.1 | Barley | cytosol | 60.94 | 59.35 |
| Zm00001d048008_P001 | Maize | cytosol | 60.94 | 58.96 |
| TraesCS4A01G060800.1 | Wheat | cytosol | 60.27 | 58.82 |
| TraesCS4D01G237600.1 | Wheat | cytosol | 60.27 | 58.82 |
| TraesCS4B01G236200.1 | Wheat | cytosol | 60.04 | 58.61 |
| Zm00001d000044_P001 | Maize | cytosol | 23.21 | 45.02 |
| AT3G19380.1 | Thale cress | cytosol, golgi, plastid | 25.45 | 27.08 |
| AT1G49780.1 | Thale cress | cytoskeleton, cytosol, vacuole | 24.55 | 26.13 |
| AT5G64660.1 | Thale cress | cytosol | 23.66 | 25.24 |
| AT1G66160.1 | Thale cress | cytosol | 23.44 | 24.36 |
| AT3G18710.1 | Thale cress | cytosol | 22.32 | 24.1 |
| AT2G35930.1 | Thale cress | cytosol | 21.88 | 23.84 |
| AT5G09800.1 | Thale cress | cytosol | 21.43 | 23.47 |
| AT3G11840.1 | Thale cress | cytosol | 23.66 | 23.25 |
| AT3G52450.1 | Thale cress | cytosol | 22.54 | 23.22 |
| AT5G37490.1 | Thale cress | cytosol, nucleus, peroxisome | 22.32 | 22.99 |
| AT3G02840.1 | Thale cress | mitochondrion | 18.75 | 22.16 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:824143 | ProteinID:AEE78593.1 | InterPro:ARM-like |
| InterPro:ARM-type_fold | ArrayExpress:AT3G49810 | EnsemblPlantsGene:AT3G49810 | RefSeq:AT3G49810 | TAIR:AT3G49810 | RefSeq:AT3G49810-TAIR-G |
| EnsemblPlants:AT3G49810.1 | TAIR:AT3G49810.1 | EMBL:AY084697 | EMBL:BT029174 | ProteinID:CAB66919.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0061630 | GO:GO:0071472 | GO:GO:1901001 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 |
| RefSeq:NP_566927.1 | PFAM:PF04564 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF105 | UniProt:Q058P4 |
| SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI00001636F1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
Coordinates
chr3:-:18474305..18477032
Molecular Weight (calculated)
48997.4 Da
IEP (calculated)
7.461
GRAVY (calculated)
0.143
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.