Factsheet for TraesCS4D01G237600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G236200.1	Wheat	cytosol	99.56	99.56
TraesCS4A01G060800.1	Wheat	cytosol	98.69	98.69
HORVU4Hr1G066070.1	Barley	cytosol	97.82	97.61
Os03t0232600-01	Rice	cytosol	90.85	90.85
Zm00001d028294_P001	Maize	cytosol	89.32	89.32
EER95229	Sorghum	cytosol	89.11	89.11
Zm00001d019807_P001	Maize	extracellular	18.08	88.3
Zm00001d048008_P001	Maize	cytosol	88.02	87.26
GSMUA_Achr8P04940_001	Banana	cytosol	62.75	66.67
GSMUA_Achr2P08620_001	Banana	cytosol	61.22	64.75
GSMUA_Achr3P25750_001	Banana	cytosol	58.82	62.94
Zm00001d000044_P001	Maize	cytosol	30.94	61.47
CDX83098	Canola	cytosol	59.04	61.17
Bra029975.1-P	Field mustard	cytosol	58.82	60.95
AT3G49810.1	Thale cress	cytosol	58.82	60.27
CDY53333	Canola	cytosol	58.39	59.96
VIT_00s0471g00010.t01	Wine grape	cytosol	58.17	59.73
VIT_18s0001g08790.t01	Wine grape	cytosol	58.61	59.51
KRH77156	Soybean	cytosol	58.17	59.47
KRH58142	Soybean	cytosol	57.08	59.01
GSMUA_Achr4P07400_001	Banana	cytosol	55.77	58.99
CDY69247	Canola	cytosol	55.99	58.01
CDY18670	Canola	cytosol	55.99	58.01
Bra037833.1-P	Field mustard	cytosol	55.99	58.01
Solyc04g077610.2.1	Tomato	cytosol	52.94	58.0
PGSC0003DMT400012566	Potato	cytosol	56.21	57.46
AT5G65920.1	Thale cress	cytosol	54.25	56.08
KRH52124	Soybean	cytosol	50.54	54.59
KRH61438	Soybean	cytosol	50.11	54.5
KRH55660	Soybean	cytosol	14.81	54.4
KRG88755	Soybean	cytosol	49.89	53.26
KRH05554	Soybean	cytosol	48.58	53.22
KRH28330	Soybean	plastid	58.82	52.53
TraesCS3D01G370000.1	Wheat	cytosol	26.36	28.95
TraesCS7D01G393700.1	Wheat	extracellular, vacuole	23.97	28.8
TraesCS6D01G367600.1	Wheat	cytosol	25.49	27.66
TraesCS6D01G367100.1	Wheat	cytosol	25.05	27.38
TraesCS2D01G305400.1	Wheat	cytosol	23.75	27.25
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	25.93	26.98
TraesCS7D01G201600.1	Wheat	mitochondrion	25.71	26.7
TraesCS6D01G237900.1	Wheat	extracellular	22.44	25.31
TraesCS2D01G296100.1	Wheat	cytosol	23.75	25.29
TraesCS2D01G449900.1	Wheat	cytosol	22.66	24.88
TraesCS6D01G251200.1	Wheat	cytosol	22.22	23.61
TraesCS6D01G292200.1	Wheat	mitochondrion	23.31	23.57
TraesCS4D01G229900.1	Wheat	mitochondrion	22.44	23.41
TraesCS6D01G167300.1	Wheat	cytosol	21.79	23.09
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	20.7	22.25
TraesCS1D01G274600.1	Wheat	mitochondrion	20.04	20.31

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009719	GO:GO:0009987	GO:GO:0016020	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0061630	GO:GO:1900457	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF6	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS4D01G237600	EnsemblPlants:TraesCS4D01G237600.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg

Description

No Description!

Coordinates

chr4D:+:399777695..399779323

Molecular Weight (calculated)

49131.2 Da

IEP (calculated)

6.890

GRAVY (calculated)

0.121

Length

459 amino acids

Sequence
(BLAST)

001: MPQYQELPCG GQVLDIDAAL KDGILGCGPE PGDGALGDGG KQPVELRKMM DELDAAGDGG GDEVVPAVFI CPISLEPMVD PVTLCTGQTY ERANISRWLA
101: LGHRTCPTTM QELWDDALTP NATLRQLIAA WFSRRYTRFK KRSADYHGRA ADLVHGLRGT AVPRRQPLKG QARVAALREL RSLASNHQSV TKAIAEAGGV
201: SLLTSLLGPF TSHSVGSEAV AILVSGVPLD ADAKAALMQP AKVSLVVDML NEGAVDTKIN CVRLIRILME EKGFRPETVA SLSLLAGSMR LVRDKRHQDG
301: VAAGLELLNS ICAVHRPARS MIVSIGAVQQ LVELLPELAT ECVEPALDIL DALASVPEGM TALKDCPRTI PNAVRLLMRV SEACTQRALS MLWVVCRMVP
401: EESAPAALEV GLAAKLLLVI QSGCGPELKQ QASELLKLCT MHCTSTVFLA KCKLTKTIQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.