Factsheet for HORVU4Hr1G066070.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G060800.1	Wheat	cytosol	97.61	97.82
TraesCS4D01G237600.1	Wheat	cytosol	97.61	97.82
TraesCS4B01G236200.1	Wheat	cytosol	97.17	97.39
Os03t0232600-01	Rice	cytosol	91.3	91.5
Zm00001d028294_P001	Maize	cytosol	90.0	90.2
EER95229	Sorghum	cytosol	89.78	89.98
Zm00001d019807_P001	Maize	extracellular	18.04	88.3
Zm00001d048008_P001	Maize	cytosol	88.7	88.12
GSMUA_Achr8P04940_001	Banana	cytosol	63.7	67.82
GSMUA_Achr2P08620_001	Banana	cytosol	62.17	65.9
GSMUA_Achr3P25750_001	Banana	cytosol	59.78	64.1
Zm00001d000044_P001	Maize	cytosol	31.09	61.9
CDX83098	Canola	cytosol	59.57	61.85
Bra029975.1-P	Field mustard	cytosol	59.13	61.4
VIT_00s0471g00010.t01	Wine grape	cytosol	59.35	61.07
AT3G49810.1	Thale cress	cytosol	59.35	60.94
CDY53333	Canola	cytosol	58.91	60.63
GSMUA_Achr4P07400_001	Banana	cytosol	56.96	60.37
KRH77156	Soybean	cytosol	58.91	60.36
VIT_18s0001g08790.t01	Wine grape	cytosol	59.13	60.18
KRH58142	Soybean	cytosol	57.83	59.91
Solyc04g077610.2.1	Tomato	cytosol	53.7	58.95
PGSC0003DMT400012566	Potato	cytosol	57.17	58.57
CDY69247	Canola	cytosol	56.09	58.24
CDY18670	Canola	cytosol	56.09	58.24
Bra037833.1-P	Field mustard	cytosol	56.09	58.24
AT5G65920.1	Thale cress	cytosol	54.57	56.53
KRH52124	Soybean	cytosol	51.09	55.29
KRH61438	Soybean	cytosol	50.65	55.21
KRH55660	Soybean	cytosol	14.78	54.4
KRG88755	Soybean	cytosol	50.65	54.19
KRH05554	Soybean	cytosol	49.35	54.18
KRH28330	Soybean	plastid	59.57	53.31
HORVU2Hr1G123130.1	Barley	cytosol	5.22	52.17
HORVU2Hr1G076490.1	Barley	mitochondrion	5.65	29.89
HORVU3Hr1G083500.1	Barley	cytosol	26.3	29.3
HORVU7Hr1G093780.1	Barley	cytosol, endoplasmic reticulum, extracellular	24.13	28.39
HORVU6Hr1G089560.1	Barley	plastid	26.09	26.61
HORVU6Hr1G089590.1	Barley	plastid	26.09	26.55
HORVU0Hr1G003810.1	Barley	cytosol	23.91	25.52
HORVU6Hr1G066870.1	Barley	cytosol	22.83	24.48
HORVU7Hr1G040790.2	Barley	plastid	25.87	24.39
HORVU4Hr1G064070.1	Barley	mitochondrion	22.83	23.86
HORVU2Hr1G074130.1	Barley	plastid	26.3	23.36
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	21.96	23.33
HORVU6Hr1G077120.1	Barley	plastid	24.13	21.68
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	20.0	20.31
HORVU2Hr1G123050.1	Barley	cytosol	14.78	20.24

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AK355590	EMBL:AK356993	EMBL:AK361435
InterPro:ARM-like	InterPro:ARM-type_fold	UniProt:F2CVD8	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0016020
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	GO:GO:1900457	EnsemblPlantsGene:HORVU4Hr1G066070
EnsemblPlants:HORVU4Hr1G066070.1	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF6	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00020049A5
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F2CVD8]

Coordinates

chrchr4H:-:550510764..550513664

Molecular Weight (calculated)

49135.2 Da

IEP (calculated)

7.108

GRAVY (calculated)

0.132

Length

460 amino acids

Sequence
(BLAST)

001: MPQYQELPCG GQVLDIDTAL KDGILGCGPE PGDGALGDGG KQPVELRKMM DELDAAGDAG GGDEVVPAVF ICPISLEPMV DPVTLCTGQT YERANISRWL
101: ALGHRTCPTT MQELWDDALT PNATLRQLIA AWFSRRYTRF KKRSADYHGR AADLVHGLRG TAVPRRHPLK GQARVAALRE LRSLASAHQS VTKAIAEAGG
201: VSLLTSLLGP FTSHSVGSEA VAILVSGVPL DGDAKAALMQ PAKVSLVVDM LNEGAVDTKI NCVRLIRILM EEKGFRPETV ASLSLLVGAM RLVRDKRHPD
301: GVAAGLELLN SICAVHRPAR SMIVSIGAVQ QLVELLPELA TECVEPALDI LDALASVPEG RTALKDCPRT IPNAVRLLMR VSEACTQRAL SMLWVVCRMV
401: PEESAPAALE VGLAAKLLLV IQSGCGPELK QQASELLKLC TVNCTSTVFL AKCKLTKTIQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.