CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61438	Soybean	cytosol	94.82	95.5
KRG88755	Soybean	cytosol	78.35	77.44
KRH05554	Soybean	cytosol	76.24	77.33
VIT_18s0001g08790.t01	Wine grape	cytosol	70.82	66.59
PGSC0003DMT400012566	Potato	cytosol	66.59	63.03
Solyc04g077610.2.1	Tomato	cytosol	60.71	61.58
KRH77156	Soybean	cytosol	64.0	60.58
KRH58142	Soybean	cytosol	62.35	59.68
Zm00001d019807_P001	Maize	extracellular	13.18	59.57
EER95229	Sorghum	cytosol	57.65	53.38
KRH28330	Soybean	plastid	64.47	53.31
Zm00001d028294_P001	Maize	cytosol	56.71	52.51
Zm00001d048008_P001	Maize	cytosol	57.18	52.48
Os03t0232600-01	Rice	cytosol	55.76	51.63
HORVU4Hr1G066070.1	Barley	cytosol	55.29	51.09
TraesCS4A01G060800.1	Wheat	cytosol	54.59	50.54
TraesCS4D01G237600.1	Wheat	cytosol	54.59	50.54
TraesCS4B01G236200.1	Wheat	cytosol	54.35	50.33
KRH55660	Soybean	cytosol	13.65	46.4
Zm00001d000044_P001	Maize	cytosol	20.24	37.23
KRH32856	Soybean	cytosol	26.12	26.43
KRH72176	Soybean	cytosol	25.88	26.32
KRH64033	Soybean	cytosol	24.0	25.95
KRH53906	Soybean	cytosol	24.0	25.89
KRH72180	Soybean	cytosol	14.12	25.86
KRH50316	Soybean	cytosol, plasma membrane, plastid	25.18	25.85
KRH22633	Soybean	cytosol, nucleus	24.47	25.81
KRH70657	Soybean	cytosol	24.47	25.06
KRH68014	Soybean	cytosol	24.71	25.0
KRH35744	Soybean	cytosol	24.47	24.82
KRG96257	Soybean	cytosol	24.47	24.82
KRH26691	Soybean	cytosol	22.59	24.81
KRH25324	Soybean	cytosol	21.18	24.79
KRG96268	Soybean	cytosol	24.24	24.58
KRH40934	Soybean	cytosol	22.12	24.23
KRH59579	Soybean	cytosol	21.18	24.06
KRH68013	Soybean	cytosol	16.71	23.99
KRH53869	Soybean	cytosol	23.29	23.74
KRH59546	Soybean	cytosol	23.29	23.68
KRH43397	Soybean	cytosol	23.29	23.68
KRH48691	Soybean	cytosol	23.76	23.11
KRG88869	Soybean	cytosol	22.59	23.02
KRH25323	Soybean	cytosol	21.88	23.02
KRH22634	Soybean	cytosol	22.82	22.99
KRH26690	Soybean	cytosol	23.06	22.95
KRH17309	Soybean	cytosol, mitochondrion	23.53	22.78
KRH72959	Soybean	cytosol, mitochondrion	23.29	22.6
KRH39018	Soybean	mitochondrion	23.29	22.6
KRH36899	Soybean	cytosol	19.53	22.37
KRG97963	Soybean	mitochondrion	22.59	22.27
KRH08734	Soybean	mitochondrion	21.65	22.22
KRH70331	Soybean	mitochondrion	20.94	21.87
KRH30918	Soybean	mitochondrion	21.88	21.38

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100808281	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02003405	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_06G047800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	UniProt:I1K885	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:KRH52124
ProteinID:KRH52124	ProteinID:KRH52124.1	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF6
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002339FA7	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:3609293..3611327

Molecular Weight (calculated)

47041.3 Da

IEP (calculated)

7.613

GRAVY (calculated)

0.200

Length

425 amino acids

Sequence
(BLAST)

001: MLLYQPLKEE VETTIMMKGD NVLDLKTLIE ELESSTIEVP SVFICPISLE PMQDPVTLCT GQTYDRSNIL KWFSLGHNTC PTTMQELWDD SVTPNTTLYH
101: FILSWFSQKY LVMKKKLEDV QGTALELLDT LKKKVKGQNR VRALKKLRQL VDSHVSTRKT VEENNGSSLI SSLLGPFTSH AVGSEAIGIL VNLELGSELK
201: RNLMHPAKVS LLVDIMNEGT IQTKMNCAKL IQTLLVEGNP SETVVLSSLS LLVGVLRLVR DKKHPTSVLT GLILLKIVCS REPVRSSIIS IGAVPQLIQL
301: LPTLNNECLE IALHILEVLS TLPEGRLALK ECPNIIPNVV KLLMRVSESC TQFALSILWA IYKLAPEECA SKAVEAGLAA KLLLVIQSGC NPVLKQKSTE
401: FLKMCSLDYS TSIFISKCML TATIQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.