CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05554	Soybean	cytosol	90.7	93.08
KRH52124	Soybean	cytosol	77.44	78.35
KRH61438	Soybean	cytosol	76.74	78.2
VIT_18s0001g08790.t01	Wine grape	cytosol	66.05	62.83
PGSC0003DMT400012566	Potato	cytosol	63.95	61.25
KRH77156	Soybean	cytosol	63.02	60.36
Solyc04g077610.2.1	Tomato	cytosol	58.37	59.9
KRH58142	Soybean	cytosol	61.63	59.68
Zm00001d019807_P001	Maize	extracellular	13.02	59.57
KRH28330	Soybean	plastid	63.49	53.11
EER95229	Sorghum	cytosol	56.28	52.72
Zm00001d048008_P001	Maize	cytosol	56.51	52.48
Zm00001d028294_P001	Maize	cytosol	55.58	52.07
Os03t0232600-01	Rice	cytosol	54.42	50.98
HORVU4Hr1G066070.1	Barley	cytosol	54.19	50.65
TraesCS4D01G237600.1	Wheat	cytosol	53.26	49.89
TraesCS4A01G060800.1	Wheat	cytosol	53.02	49.67
TraesCS4B01G236200.1	Wheat	cytosol	53.02	49.67
KRH55660	Soybean	cytosol	13.49	46.4
Zm00001d000044_P001	Maize	cytosol	20.47	38.1
KRH72180	Soybean	cytosol	14.19	26.29
KRH43397	Soybean	cytosol	24.88	25.6
KRH64033	Soybean	cytosol	23.26	25.45
KRH53869	Soybean	cytosol	24.65	25.42
KRH50316	Soybean	cytosol, plasma membrane, plastid	24.42	25.36
KRH72176	Soybean	cytosol	24.65	25.36
KRH59546	Soybean	cytosol	24.65	25.36
KRH53906	Soybean	cytosol	23.02	25.13
KRH32856	Soybean	cytosol	24.42	25.0
KRH22633	Soybean	cytosol, nucleus	23.26	24.81
KRH70657	Soybean	cytosol	23.72	24.58
KRH68014	Soybean	cytosol	23.72	24.29
KRH40934	Soybean	cytosol	21.86	24.23
KRG96257	Soybean	cytosol	23.49	24.11
KRH26691	Soybean	cytosol	21.63	24.03
KRH68013	Soybean	cytosol	16.51	23.99
KRG96268	Soybean	cytosol	23.26	23.87
KRH35744	Soybean	cytosol	23.26	23.87
KRH59579	Soybean	cytosol	20.7	23.8
KRH36899	Soybean	cytosol	20.47	23.72
KRH25324	Soybean	cytosol	19.77	23.42
KRH22634	Soybean	cytosol	22.09	22.51
KRH26690	Soybean	cytosol	22.33	22.48
KRG88869	Soybean	cytosol	21.63	22.3
KRH72959	Soybean	cytosol, mitochondrion	22.56	22.15
KRH17309	Soybean	cytosol, mitochondrion	22.56	22.1
KRH08734	Soybean	mitochondrion	21.16	21.98
KRH48691	Soybean	cytosol	22.33	21.97
KRG97963	Soybean	mitochondrion	21.86	21.81
KRH25323	Soybean	cytosol	20.47	21.78
KRH39018	Soybean	mitochondrion	21.86	21.46
KRH70331	Soybean	mitochondrion	20.23	21.38
KRH30918	Soybean	mitochondrion	21.16	20.92

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100803878	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
ncoils:Coil	EnsemblPlantsGene:GLYMA_U029700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	UniProt:I1M8V2	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:KRG88755
ProteinID:KRG88755	ProteinID:KRG88755.1	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF6
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000295A22C	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chrscaffold_28:-:185199..186870

Molecular Weight (calculated)

47569.2 Da

IEP (calculated)

7.322

GRAVY (calculated)

0.225

Length

430 amino acids

Sequence
(BLAST)

001: MILEEGCAKM QFFQPSKERE DENAKIEEAG VDLKVMIEEM ESIDVPSVFI CPISLEPMQD PVTLCTGQTY DRSNILKWFS LGHKTCPTTM QELWDDVVTP
101: NSTLSHLMLT WFSQKYLALK KKLKDVQGRA LEILNMLKKV KGQARVRALQ DLRQLVASHV NARKALEENG GVALVFNFLG PFTSHAVGSE AIGIIVCLDL
201: SSEVKRSLMH PAKVSLLVDI MNEGTIETKM NCAKLIEMLL VEGNNETVSS LSLLVGLLRL VRDKKHPNGV VSIGLILLKK AIICSHESVR SSLISLGAIP
301: LLIELLPSLN NECLEKALYI LEVLSTLPEG RMALKECPNI IPNVVKLLMR VSERCTQFAL SILWAIYKLA PEECASKAVE AGLAAKLLLV IQSGCNPVLK
401: QMSSEFLKMC SLNYSTSILV SKCMLTTTIQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.