CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89234
KRH49769

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	KRG89234	AT4G33945.1	21798944
AT5G09800.1	KRH49769	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36899	Soybean	cytosol	64.75	72.78
KRH43397	Soybean	cytosol	66.67	66.51
KRH59546	Soybean	cytosol	64.75	64.59
VIT_04s0044g00870.t01	Wine grape	cytosol	57.31	58.01
CDY08864	Canola	cytosol	51.8	51.55
Bra024318.1-P	Field mustard	cytosol	51.56	51.31
CDX84538	Canola	cytosol	51.56	51.31
AT5G09800.1	Thale cress	cytosol	49.64	50.61
AT5G64660.1	Thale cress	cytosol	50.84	50.48
AT3G18710.1	Thale cress	cytosol	49.4	49.64
CDX75980	Canola	cytosol	48.68	47.88
Bra001717.1-P	Field mustard	cytosol	48.68	47.88
CDX82332	Canola	cytosol	48.44	47.64
CDX92262	Canola	cytosol	46.52	46.97
GSMUA_Achr8P30420_001	Banana	mitochondrion	30.7	46.89
CDY71041	Canola	cytosol	46.04	46.49
PGSC0003DMT400065698	Potato	cytosol	46.76	46.43
Bra037568.1-P	Field mustard	cytosol	45.8	46.25
Bra022347.1-P	Field mustard	cytosol	47.0	46.23
Solyc11g005700.1.1	Tomato	cytosol	46.52	46.19
CDX99325	Canola	cytosol	46.52	45.86
KRH08734	Soybean	mitochondrion	39.09	39.37
GSMUA_Achr10P...	Banana	plastid	36.21	39.32
GSMUA_Achr5P01020_001	Banana	cytosol	36.93	38.4
GSMUA_Achr6P18140_001	Banana	cytosol	37.17	37.9
Zm00001d016719_P001	Maize	cytosol	38.61	37.53
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	39.33	37.19
TraesCS2B01G315100.1	Wheat	cytosol	39.33	37.19
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	39.33	37.19
Zm00001d050689_P001	Maize	cytosol	38.13	37.06
KRH70331	Soybean	mitochondrion	35.97	36.85
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	38.37	36.04
EES05205	Sorghum	cytosol	39.09	35.98
OQU81548	Sorghum	mitochondrion	38.37	35.79
Os04t0418500-01	Rice	plastid	38.61	35.7
Os02t0540700-00	Rice	plastid	39.57	32.67
HORVU2Hr1G074130.1	Barley	plastid	39.09	31.47
KRH72180	Soybean	cytosol	16.79	30.17
Zm00001d038280_P001	Maize	cytosol	30.94	28.54
KXG22102	Sorghum	mitochondrion	30.22	27.57
KRH59579	Soybean	cytosol	24.7	27.54
KRH26691	Soybean	cytosol	25.42	27.39
KRH68014	Soybean	cytosol	27.58	27.38
KRH72176	Soybean	cytosol	27.34	27.27
Os05t0439400-01	Rice	plasma membrane	29.5	27.21
KRH22633	Soybean	cytosol, nucleus	26.14	27.05
KRH68013	Soybean	cytosol	19.18	27.03
KRH35744	Soybean	cytosol	27.1	26.97
TraesCS1B01G284200.1	Wheat	mitochondrion	29.26	26.93
TraesCS1A01G274800.1	Wheat	mitochondrion	29.26	26.93
KRH32856	Soybean	cytosol	27.1	26.9
KRH40934	Soybean	cytosol	24.94	26.8
KRG96257	Soybean	cytosol	26.86	26.73
TraesCS1D01G274600.1	Wheat	mitochondrion	29.02	26.71
KRG96268	Soybean	cytosol	26.62	26.49
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	28.54	26.27
KRH39018	Soybean	mitochondrion	27.1	25.8
KRH55660	Soybean	cytosol	7.67	25.6
KRH48691	Soybean	cytosol	26.38	25.17
KRH50316	Soybean	cytosol, plasma membrane, plastid	24.94	25.12
KRG97963	Soybean	mitochondrion	25.9	25.06
KRH53906	Soybean	cytosol	23.5	24.87
KRH05554	Soybean	cytosol	24.94	24.82
KRH70657	Soybean	cytosol	24.7	24.82
KRH64033	Soybean	cytosol	23.26	24.68
KRG88755	Soybean	cytosol	25.42	24.65
KRH30918	Soybean	mitochondrion	25.66	24.6
KRH25324	Soybean	cytosol	21.34	24.52
KRH61438	Soybean	cytosol	24.46	24.17
KRH22634	Soybean	cytosol	23.98	23.7
KRH58142	Soybean	cytosol	25.18	23.65
KRH52124	Soybean	cytosol	23.74	23.29
KRG88869	Soybean	cytosol	23.26	23.26
KRH72959	Soybean	cytosol, mitochondrion	24.22	23.06
KRH17309	Soybean	cytosol, mitochondrion	24.22	23.01
KRH26690	Soybean	cytosol	23.5	22.95
KRH77156	Soybean	cytosol	23.98	22.27
KRH25323	Soybean	cytosol	21.34	22.03
KRH28330	Soybean	plastid	24.7	20.04

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100801033	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EMBL:ACUP02003487	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_06G151200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	UniProt:I1KBH4	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:KRH53869
ProteinID:KRH53869	ProteinID:KRH53869.1	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF20
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00023381B1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:12318461..12320311

Molecular Weight (calculated)

45551.7 Da

IEP (calculated)

8.486

GRAVY (calculated)

0.154

Length

417 amino acids

Sequence
(BLAST)

001: MVRARDDLCI SVPSFFKCPI SLDVMKSPVS LCTGVTYDRS SIQRWLDAGN NTCPATMQLL HTKDFIPNRT LQSLIQIWSD SLLRHPTPSE PLPSPDQVLR
101: TVFDFKSDSD SLRFGSLSKL LLFAKDSLQN KLFLAKLEGF VNQLVRFLHN VDVGVTAGTS VEFLEQVVIV LGLILDSIED REGLKNSMLK GKKQSLDSLL
201: LVLQRGSLES KIASARVLQF VAVDAEAKIS IAEKESVVAE LLKSAAPEKD AALIEAALAS LVAISAPKRN KLKLVNLGAV KAMTRLLTEA NLGAAAVEKV
301: LKIVETASST REGRSEICEE ATAACVAAVL SKVLKVSSAA TEHAVTTLWS LCYLFRDRKA QEAVTQNNGL TKILLLMQSN CAPHVRQMCT DLLKIFLANS
401: KSCLSCYDTK TTHIMPF

Best Arabidopsis Sequence Match ( AT5G64660.1 )
(BLAST)

001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF

Arabidopsis Description

PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.