CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH36899
KRH43397
KRH53869
KRH59546

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33945.1	KRH36899	AT5G09800.1	21798944
AT4G33945.1	KRH43397	AT5G09800.1	21798944
AT4G33945.1	KRH53869	AT5G09800.1	21798944
AT4G33945.1	KRH59546	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49769	Soybean	plastid	72.43	28.76
VIT_03s0063g01020.t01	Wine grape	cytosol	61.08	24.57
PGSC0003DMT400059061	Potato	cytosol	55.68	22.34
CDX69015	Canola	cytosol	54.05	22.03
Solyc11g044870.1.1	Tomato	cytosol	54.05	21.69
Bra011480.1-P	Field mustard	cytosol	52.97	21.59
CDX75390	Canola	cytosol	52.97	21.59
GSMUA_Achr3P06810_001	Banana	cytosol	54.05	21.46
AT4G33945.1	Thale cress	cytosol	53.51	21.34
TraesCS6D01G293000.1	Wheat	cytosol	50.81	20.57
TraesCS6B01G343700.1	Wheat	cytosol	50.81	20.57
TraesCS6A01G313600.1	Wheat	cytosol	50.27	20.35
Os02t0761200-01	Rice	cytosol	50.27	20.09
KXG31158	Sorghum	cytosol	49.19	19.78
Zm00001d018144_P003	Maize	cytosol	49.73	18.62
HORVU6Hr1G077280.1	Barley	cytosol	49.19	18.35
Zm00001d005332_P001	Maize	cytosol	2.16	1.9

Protein Annotations

EMBL:ACUP02012192	EnsemblPlants:KRG89234	EnsemblPlantsGene:GLYMA_20G009900	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR22895	PANTHER:PTHR22895:SF0	ProteinID:KRG89234
ProteinID:KRG89234.1	SUPFAM:SSF48371	UniParc:UPI0006EDD55A	UniProt:A0A0R0EDK2	MapMan:13.2.5.1.3	:

Description

hypothetical protein

Coordinates

chr20:-:862084..864118

Molecular Weight (calculated)

20376.9 Da

IEP (calculated)

7.713

GRAVY (calculated)

0.042

Length

185 amino acids

Sequence
(BLAST)

001: MSNMFYLQVS PCGPDLISAC ITLRAIAVND EICKSIAEKG GIDAILRRID DSGEQGNKAV AKVCCSLLSK LAGSDANKST IVGKGGMDKL IKLSARFADD
101: PSVLQEIMSI ILVTSLFKQW RNPENRQASV LIMVTLLAHF LLDRTILLNN GIEKYIRKAK QTHSNCTDGS RDLELDNFDL YCFTM

Best Arabidopsis Sequence Match ( AT4G33945.1 )
(BLAST)

001: MGVRTISQEA FDDLVRENVE DLGMDPSEAL EDALYTLKLQ GVDLFGIITC VPGESSVKDN PVIACLDRLK EFDSVSIDGP LRDEVFDEIS SLFKNLNELC
101: SSQESGNAAI ATKHGAVDLT CSICSKIKIS TRSNRVLVPC FKALAVLIRD IQSTERFRNC TGPNIVVDLL NDSSSDSDLL DAGFAVVAAA ATGNEVVKQL
201: FMELKIDELI LQVLNRESKT TIRALYDAIC ALLTPDDFRV VASQVYGYAR TFAKLGIATA LTEALQAGIG SDSLVSASTA LKAIAVNDEI CKSIAESGGI
301: DTLLRCIDDS GEQGNKTAAK TCCSLLSKLA GSDSNKSTIV EKQGLDKLIT LALRFSDDPL VIQEVMLIIS IICLRSPDHA AKAIEAGAGD LAVQAMKRFP
401: VAAQMQRNAC NMIRNIAVRS AENRTILLAN GIEKLIRTAK ANNETCRAAA TDALRDLGLD NYNN

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.