Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G09800.1 | KRG89234 | AT4G33945.1 | 21798944 |
| AT5G09800.1 | KRH49769 | AT4G33945.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH43397 | Soybean | cytosol | 91.87 | 91.87 |
| VIT_04s0044g00870.t01 | Wine grape | cytosol | 63.88 | 64.81 |
| KRH53869 | Soybean | cytosol | 64.59 | 64.75 |
| KRH36899 | Soybean | cytosol | 48.56 | 54.72 |
| AT5G64660.1 | Thale cress | cytosol | 54.55 | 54.29 |
| Bra024318.1-P | Field mustard | cytosol | 54.31 | 54.18 |
| AT5G09800.1 | Thale cress | cytosol | 52.87 | 54.03 |
| CDY08864 | Canola | cytosol | 54.07 | 53.94 |
| CDX84538 | Canola | cytosol | 53.83 | 53.7 |
| Solyc11g005700.1.1 | Tomato | cytosol | 51.67 | 51.43 |
| PGSC0003DMT400065698 | Potato | cytosol | 51.44 | 51.19 |
| AT3G18710.1 | Thale cress | cytosol | 50.24 | 50.6 |
| CDX75980 | Canola | cytosol | 49.52 | 48.82 |
| GSMUA_Achr8P30420_001 | Banana | mitochondrion | 31.82 | 48.72 |
| Bra001717.1-P | Field mustard | cytosol | 49.28 | 48.58 |
| CDX82332 | Canola | cytosol | 49.04 | 48.35 |
| CDX92262 | Canola | cytosol | 47.13 | 47.7 |
| CDX99325 | Canola | cytosol | 47.61 | 47.04 |
| Bra022347.1-P | Field mustard | cytosol | 47.13 | 46.46 |
| CDY71041 | Canola | cytosol | 45.69 | 46.25 |
| Bra037568.1-P | Field mustard | cytosol | 44.74 | 45.28 |
| KRH08734 | Soybean | mitochondrion | 38.04 | 38.41 |
| GSMUA_Achr10P... | Banana | plastid | 34.93 | 38.02 |
| KRH70331 | Soybean | mitochondrion | 36.6 | 37.59 |
| GSMUA_Achr5P01020_001 | Banana | cytosol | 34.69 | 36.16 |
| Zm00001d016719_P001 | Maize | cytosol | 37.08 | 36.13 |
| Zm00001d050689_P001 | Maize | cytosol | 37.08 | 36.13 |
| GSMUA_Achr6P18140_001 | Banana | cytosol | 35.17 | 35.94 |
| TraesCS2A01G298600.1 | Wheat | cytosol, mitochondrion, plastid | 37.56 | 35.6 |
| TraesCS2D01G296700.1 | Wheat | cytosol, mitochondrion, plastid | 37.32 | 35.37 |
| TraesCS2B01G315100.1 | Wheat | cytosol | 37.32 | 35.37 |
| EES05205 | Sorghum | cytosol | 37.56 | 34.66 |
| Os04t0418500-01 | Rice | plastid | 37.08 | 34.37 |
| Zm00001d025379_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 36.36 | 34.23 |
| OQU81548 | Sorghum | mitochondrion | 36.6 | 34.23 |
| Os02t0540700-00 | Rice | plastid | 37.8 | 31.29 |
| HORVU2Hr1G074130.1 | Barley | plastid | 37.32 | 30.12 |
| KRH72180 | Soybean | cytosol | 16.51 | 29.74 |
| KRH59579 | Soybean | cytosol | 24.88 | 27.81 |
| KRH40934 | Soybean | cytosol | 24.88 | 26.8 |
| KRH22633 | Soybean | cytosol, nucleus | 25.84 | 26.8 |
| KRH68014 | Soybean | cytosol | 26.79 | 26.67 |
| KRH72176 | Soybean | cytosol | 26.55 | 26.55 |
| KRH32856 | Soybean | cytosol | 26.55 | 26.43 |
| KRH55660 | Soybean | cytosol | 7.89 | 26.4 |
| KRH26691 | Soybean | cytosol | 24.4 | 26.36 |
| Zm00001d038280_P001 | Maize | cytosol | 28.23 | 26.11 |
| KRH39018 | Soybean | mitochondrion | 27.03 | 25.8 |
| KRH35744 | Soybean | cytosol | 25.84 | 25.78 |
| KRH53906 | Soybean | cytosol | 24.16 | 25.63 |
| KRG96257 | Soybean | cytosol | 25.6 | 25.54 |
| HORVU1Hr1G074180.1 | Barley | mitochondrion, plastid | 27.51 | 25.39 |
| KXG22102 | Sorghum | mitochondrion | 27.75 | 25.38 |
| KRG96268 | Soybean | cytosol | 25.36 | 25.3 |
| Os05t0439400-01 | Rice | plasma membrane | 27.27 | 25.22 |
| KRH64033 | Soybean | cytosol | 23.68 | 25.19 |
| KRH48691 | Soybean | cytosol | 26.32 | 25.17 |
| TraesCS1A01G274800.1 | Wheat | mitochondrion | 27.27 | 25.17 |
| TraesCS1B01G284200.1 | Wheat | mitochondrion | 27.27 | 25.17 |
| KRH50316 | Soybean | cytosol, plasma membrane, plastid | 24.88 | 25.12 |
| KRH05554 | Soybean | cytosol | 25.12 | 25.06 |
| KRH68013 | Soybean | cytosol | 17.7 | 25.0 |
| TraesCS1D01G274600.1 | Wheat | mitochondrion | 27.03 | 24.94 |
| KRH70657 | Soybean | cytosol | 24.64 | 24.82 |
| KRG88755 | Soybean | cytosol | 25.36 | 24.65 |
| KRH77156 | Soybean | cytosol | 26.08 | 24.28 |
| KRH72959 | Soybean | cytosol, mitochondrion | 25.12 | 23.97 |
| KRH25324 | Soybean | cytosol | 20.81 | 23.97 |
| KRH61438 | Soybean | cytosol | 23.92 | 23.7 |
| KRH58142 | Soybean | cytosol | 25.12 | 23.65 |
| KRH52124 | Soybean | cytosol | 23.68 | 23.29 |
| KRH17309 | Soybean | cytosol, mitochondrion | 24.4 | 23.23 |
| KRG97963 | Soybean | mitochondrion | 23.68 | 22.97 |
| KRH30918 | Soybean | mitochondrion | 23.45 | 22.53 |
| KRG88869 | Soybean | cytosol | 22.01 | 22.06 |
| KRH22634 | Soybean | cytosol | 21.53 | 21.33 |
| KRH26690 | Soybean | cytosol | 21.77 | 21.31 |
| KRH25323 | Soybean | cytosol | 20.33 | 21.04 |
| KRH28330 | Soybean | plastid | 25.84 | 21.01 |
Protein Annotations
| Gene3D:1.25.10.10 | EntrezGene:100781196 | MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | EMBL:ACUP02003329 | InterPro:ARM-like |
| InterPro:ARM-type_fold | EnsemblPlantsGene:GLYMA_05G189600 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | UniProt:I1K4X0 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | EnsemblPlants:KRH59546 |
| ProteinID:KRH59546 | ProteinID:KRH59546.1 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF20 |
| SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI000233A0FC | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:37541210..37543394
Molecular Weight (calculated)
46146.0 Da
IEP (calculated)
6.502
GRAVY (calculated)
0.038
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRDDLCITV PSFFRCPISL DVMKSPVSLC TGVTYDRSSI QRWLDNGNNT CPATMQVLQT RDFVPNRTLQ RLIQIWSDSV TLRVDSPESP TSTQSESVLS
101: KDQILVAISE LQTHCANRFD SLAKIARFAQ DSEENLDFLV RTECFVPALV GFLDNVNDGV EFLEQVVTAL DLVVSKMEDC EGLKNLILKR QGGGEKQSVD
201: SLLLLLQQGS HVIKIASARV LKSLAVDAES KLLLAEKDGL LSELLNLITP EKDPDLMENC LSCLVSLSTP RRSKMKLVRL GAVKVFSNLL STPSLSVSVT
301: EKVLKLVETV SSTKEGRSEI CEDSACVSAI VNKVLKVSSV ATEHAVTTLW SVCYLFRDQK AQEAVTKANG LTKILLLMQS NCSPQVRQMS SDLLKIFRVN
401: SKSCLSSYDT KTTHIMPF
101: KDQILVAISE LQTHCANRFD SLAKIARFAQ DSEENLDFLV RTECFVPALV GFLDNVNDGV EFLEQVVTAL DLVVSKMEDC EGLKNLILKR QGGGEKQSVD
201: SLLLLLQQGS HVIKIASARV LKSLAVDAES KLLLAEKDGL LSELLNLITP EKDPDLMENC LSCLVSLSTP RRSKMKLVRL GAVKVFSNLL STPSLSVSVT
301: EKVLKLVETV SSTKEGRSEI CEDSACVSAI VNKVLKVSSV ATEHAVTTLW SVCYLFRDQK AQEAVTKANG LTKILLLMQS NCSPQVRQMS SDLLKIFRVN
401: SKSCLSSYDT KTTHIMPF
001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF
Arabidopsis Description
PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.