Factsheet for VIT_04s0044g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g01020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	VIT_03s0063g01020.t01	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43397	Soybean	cytosol	65.29	64.35
KRH59546	Soybean	cytosol	64.81	63.88
KRH53869	Soybean	cytosol	58.01	57.31
VIT_18s0166g00190.t01	Wine grape	plasma membrane	54.13	55.75
Bra024318.1-P	Field mustard	cytosol	55.83	54.89
AT5G64660.1	Thale cress	cytosol	55.83	54.76
CDY08864	Canola	cytosol	55.58	54.65
CDX84538	Canola	cytosol	55.34	54.42
AT5G09800.1	Thale cress	cytosol	53.16	53.55
Solyc11g005700.1.1	Tomato	cytosol	51.46	50.48
PGSC0003DMT400065698	Potato	cytosol	50.97	50.0
AT3G18710.1	Thale cress	cytosol	50.24	49.88
CDX92262	Canola	cytosol	50.0	49.88
CDX99325	Canola	cytosol	50.24	48.94
Bra022347.1-P	Field mustard	cytosol	50.24	48.82
GSMUA_Achr8P30420_001	Banana	mitochondrion	32.28	48.72
CDX82332	Canola	cytosol	50.0	48.58
Bra001717.1-P	Field mustard	cytosol	50.0	48.58
KRH36899	Soybean	cytosol	43.69	48.52
CDY71041	Canola	cytosol	48.54	48.43
CDX75980	Canola	cytosol	49.51	48.11
Bra037568.1-P	Field mustard	cytosol	48.06	47.94
GSMUA_Achr10P...	Banana	plastid	38.11	40.89
GSMUA_Achr6P18140_001	Banana	cytosol	40.29	40.59
Zm00001d050689_P001	Maize	cytosol	41.5	39.86
Zm00001d016719_P001	Maize	cytosol	41.02	39.39
GSMUA_Achr5P01020_001	Banana	cytosol	37.38	38.4
EES05205	Sorghum	cytosol	41.5	37.75
TraesCS2B01G315100.1	Wheat	cytosol	39.81	37.19
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	39.56	36.96
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	39.56	36.96
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	39.56	36.71
OQU81548	Sorghum	mitochondrion	39.56	36.47
Os04t0418500-01	Rice	plastid	38.35	35.03
Os02t0540700-00	Rice	plastid	40.78	33.27
HORVU2Hr1G074130.1	Barley	plastid	39.81	31.66
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	28.64	28.71
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	28.64	28.71
VIT_06s0009g00320.t01	Wine grape	cytosol	28.64	28.5
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	31.31	28.48
KXG22102	Sorghum	mitochondrion	31.55	28.45
Zm00001d038280_P001	Maize	cytosol	31.07	28.32
TraesCS1D01G274600.1	Wheat	mitochondrion	31.07	28.26
TraesCS1A01G274800.1	Wheat	mitochondrion	31.07	28.26
TraesCS1B01G284200.1	Wheat	mitochondrion	31.07	28.26
Os05t0439400-01	Rice	plasma membrane	30.83	28.1
VIT_04s0044g01460.t01	Wine grape	cytosol	26.46	27.32
VIT_01s0011g06140.t01	Wine grape	mitochondrion	28.64	26.7
VIT_03s0063g00180.t01	Wine grape	cytosol	26.7	26.51
VIT_06s0009g00370.t01	Wine grape	cytosol	24.51	24.94
VIT_00s0471g00010.t01	Wine grape	cytosol	26.7	24.61
VIT_08s0105g00200.t01	Wine grape	cytosol	23.54	23.89
VIT_18s0001g08790.t01	Wine grape	cytosol	25.73	23.45

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100264434	wikigene:100264434	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CCB60435	ProteinID:CCB60435.1	UniProt:F6I0G9	EMBL:FN596506
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100264434	wikigene:LOC100264434
PFAM:PF04564	PFAM:PF05804	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF20
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00015CBEB8	InterPro:Ubox_domain	ArrayExpress:VIT_04s0044g00870
EnsemblPlantsGene:VIT_04s0044g00870	EnsemblPlants:VIT_04s0044g00870.t01	RefSeq:XP_002281970	RefSeq:XP_002281970.1	InterPro:Znf_RING/FYVE/PHD	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6I0G9]

Coordinates

chr4:+:22059413..22060988

Molecular Weight (calculated)

45843.7 Da

IEP (calculated)

7.323

GRAVY (calculated)

-0.019

Length

412 amino acids

Sequence
(BLAST)

001: MVRDNLFITV PSLFRCPISL DVMKSPVSLC TGVTYDRSSI QRWLDNGNNT CPATMQVLHS KDFVPNHTLQ RLIQIWSNSV RHRSNSPDSP IQLVPSLSPD
101: QARDLIKEIE SKPEDCLECM SKIICFARES EESRKFLARI DGFVSLLVDF LGSGNANFLA LEQVVRVLDM IISEHEDHKQ LANSMLKSDR DCLSSILLVL
201: QQGSAESRIA SARVLESIAI DAESKLLIAE KDGLFSELIR IMSTETDPTM IESTLSCLIA VSMPRRIRPK IVRLGVVKQL TKLLSDPNWS VSVTEKALKL
301: LEMASSCKEG KSEICENSDC VSAIVQKMLK VSSTATEHAV TILWSVCYLS RDDRAQSTVT QNNGLTKILV LMQSNCSPAV RQLAGDLLKI FRVSSKSCLS
401: SYDTKTTHIM PF

Best Arabidopsis Sequence Match ( AT5G64660.1 )
(BLAST)

001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF

Arabidopsis Description

PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.