Factsheet for VIT_03s0063g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0044g00870.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33945.1	VIT_04s0044g00870.t01	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06810_001	Banana	cytosol	69.57	68.67
PGSC0003DMT400059061	Potato	cytosol	65.87	65.73
CDX69015	Canola	cytosol	64.57	65.42
CDX75390	Canola	cytosol	64.57	65.42
Solyc11g044870.1.1	Tomato	cytosol	65.22	65.08
Bra011480.1-P	Field mustard	cytosol	64.13	64.98
AT4G33945.1	Thale cress	cytosol	65.22	64.66
KRG89234	Soybean	cytosol, extracellular	24.57	61.08
KRH49769	Soybean	plastid	61.52	60.73
KXG31158	Sorghum	cytosol	59.57	59.57
TraesCS6A01G313600.1	Wheat	cytosol	58.7	59.08
TraesCS6D01G293000.1	Wheat	cytosol	58.7	59.08
Os02t0761200-01	Rice	cytosol	58.26	57.88
TraesCS6B01G343700.1	Wheat	cytosol	57.17	57.55
Zm00001d018144_P003	Maize	cytosol	58.48	54.45
HORVU6Hr1G077280.1	Barley	cytosol	57.39	53.23
Zm00001d005332_P001	Maize	cytosol	15.22	33.33

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100253702	wikigene:100253702	MapMan:13.2.5.1.3	EMBL:AM468901	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CAN81421	ProteinID:CAN81421.1	ProteinID:CBI32460	ProteinID:CBI32460.3
ncoils:Coil	UniProt:D7TPN7	EMBL:FN596006	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000225	InterPro:IPR011989	EntrezGene:LOC100253702	wikigene:LOC100253702	PANTHER:PTHR22895	PANTHER:PTHR22895:SF0
SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0001982F1A	ArrayExpress:VIT_03s0063g01020	EnsemblPlantsGene:VIT_03s0063g01020	EnsemblPlants:VIT_03s0063g01020.t01
unigene:Vvi.25812	RefSeq:XP_002281840	RefSeq:XP_002281840.1	:	:	:

Description

No Description!

Coordinates

chr3:+:4450883..4454636

Molecular Weight (calculated)

48909.6 Da

IEP (calculated)

4.575

GRAVY (calculated)

0.020

Length

460 amino acids

Sequence
(BLAST)

001: MGQKKGVRTI SQAAFDELVR ENMEDLGMEP AEALEDALQT LTLQGVDLSG IVACVPGDGS VGDNPVIQSL DRLKQLDSDW VGFGEMVEVF DKLTELCSIE
101: GSDNAAIATR NGGVEVVCSV CSKIRVGCEG DSVLVSGLTT MASLLHDVQS TETFQKIGGP KIVVGVLNDA SQNVDILNSG FSVVAAAATG NEILKESFMD
201: LQIDELIIQI MKSHGRGRVH SIYDAICVLL TPDDNRVVAS QVYGYARRFA KAGIAGALVE SLGEGLRSPS LVSASIALKA VAVNDEICKS IAESGGIDAV
301: LRCIDDSGEQ GNKTVARACC SLLSKLAGSD ANKSTIVEKG GMDRLIKLSA RFSDDPSVLQ EVMPIFCVLS LRSPDNAARA VEAGAGDLAI QAMQKFPAAQ
401: QMQRNSCLMI RNLVVRNQEN RTLLLSNGIE KIIRKAKENH ESCKDAANDA LRDLGLDYNS

Best Arabidopsis Sequence Match ( AT4G33945.1 )
(BLAST)

001: MGVRTISQEA FDDLVRENVE DLGMDPSEAL EDALYTLKLQ GVDLFGIITC VPGESSVKDN PVIACLDRLK EFDSVSIDGP LRDEVFDEIS SLFKNLNELC
101: SSQESGNAAI ATKHGAVDLT CSICSKIKIS TRSNRVLVPC FKALAVLIRD IQSTERFRNC TGPNIVVDLL NDSSSDSDLL DAGFAVVAAA ATGNEVVKQL
201: FMELKIDELI LQVLNRESKT TIRALYDAIC ALLTPDDFRV VASQVYGYAR TFAKLGIATA LTEALQAGIG SDSLVSASTA LKAIAVNDEI CKSIAESGGI
301: DTLLRCIDDS GEQGNKTAAK TCCSLLSKLA GSDSNKSTIV EKQGLDKLIT LALRFSDDPL VIQEVMLIIS IICLRSPDHA AKAIEAGAGD LAVQAMKRFP
401: VAAQMQRNAC NMIRNIAVRS AENRTILLAN GIEKLIRTAK ANNETCRAAA TDALRDLGLD NYNN

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.