Factsheet for GSMUA_Achr3P06810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr5P01020_001
GSMUA_Achr6P18140_001
GSMUA_Achr8P30420_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33945.1	GSMUA_Achr10P...	AT5G09800.1	21798944
AT4G33945.1	GSMUA_Achr5P01020_001	AT5G09800.1	21798944
AT4G33945.1	GSMUA_Achr6P18140_001	AT5G09800.1	21798944
AT4G33945.1	GSMUA_Achr8P30420_001	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g01020.t01	Wine grape	cytosol	68.67	69.57
Os02t0761200-01	Rice	cytosol	61.16	61.56
Solyc11g044870.1.1	Tomato	cytosol	60.73	61.39
PGSC0003DMT400059061	Potato	cytosol	60.52	61.17
KXG31158	Sorghum	cytosol	60.09	60.87
TraesCS6D01G293000.1	Wheat	cytosol	58.8	59.96
TraesCS6A01G313600.1	Wheat	cytosol	58.37	59.52
TraesCS6B01G343700.1	Wheat	cytosol	58.15	59.3
CDX69015	Canola	cytosol	57.51	59.03
CDX75390	Canola	cytosol	57.3	58.81
AT4G33945.1	Thale cress	cytosol	58.15	58.41
Bra011480.1-P	Field mustard	cytosol	56.87	58.37
HORVU6Hr1G077280.1	Barley	cytosol	58.8	55.24
Zm00001d018144_P003	Maize	cytosol	57.94	54.66
KRG89234	Soybean	cytosol, extracellular	21.46	54.05
KRH49769	Soybean	plastid	52.58	52.58
Zm00001d005332_P001	Maize	cytosol	13.95	30.95

Protein Annotations

EnsemblPlants:GSMUA_Achr3P06810_001	EnsemblPlants:GSMUA_Achr3T06810_001	EnsemblPlantsGene:GSMUA_Achr3G06810_001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR22895	PANTHER:PTHR22895:SF0	SEG:seg	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0002953301
UniProt:M0SCE8	MapMan:13.2.5.1.3	:	:	:	:

Description

Putative Armadillo repeat-containing protein 6 [Source:GMGC_GENE;Acc:GSMUA_Achr3G06810_001]

Coordinates

chr3:-:4584450..4591431

Molecular Weight (calculated)

49830.0 Da

IEP (calculated)

4.750

GRAVY (calculated)

0.018

Length

466 amino acids

Sequence
(BLAST)

001: MGPSAGGRTI SQEAFEALVA ENMEDLGMDP EEALEDALQT LTLQGVDLSG IVKCIPGVSS TKDNPVIQTL DKLKNVTSSL GSSKSNITND QEMAELLDKL
101: YGLCSVDGSD NATIATRNGG VELLTRICSS LNVKIEGLLV SSLKALSSIL VDVQSRETFR QNGGPKVVVG ILNGSSKSPD ILDSAFAVVV TASTNDEILK
201: ESFMDLKIDE LIMQILKELP RSSLYSLYDA IRVLLTPDDN RVLASQVFGY ARKFAKVGIS DALVQALGEG LSLSNLAAAC TALKAVAVND EICKSISESG
301: GIDATLRCLD ESSRQNNKLI ARACCSLLSK LAGSDANKSA IVEKGGLDRL MKLSSRFSED PSVLQEVMSI ITVLSLRSPE NAAVAVQAGV ADLVLQAMQK
401: FPTSIQMQRQ ACLMIRNLVV RNPENRTILL SNGIEKLIRR AKESHESCKD AATAALRDLG LDDYNK

Best Arabidopsis Sequence Match ( AT4G33945.1 )
(BLAST)

001: MGVRTISQEA FDDLVRENVE DLGMDPSEAL EDALYTLKLQ GVDLFGIITC VPGESSVKDN PVIACLDRLK EFDSVSIDGP LRDEVFDEIS SLFKNLNELC
101: SSQESGNAAI ATKHGAVDLT CSICSKIKIS TRSNRVLVPC FKALAVLIRD IQSTERFRNC TGPNIVVDLL NDSSSDSDLL DAGFAVVAAA ATGNEVVKQL
201: FMELKIDELI LQVLNRESKT TIRALYDAIC ALLTPDDFRV VASQVYGYAR TFAKLGIATA LTEALQAGIG SDSLVSASTA LKAIAVNDEI CKSIAESGGI
301: DTLLRCIDDS GEQGNKTAAK TCCSLLSKLA GSDSNKSTIV EKQGLDKLIT LALRFSDDPL VIQEVMLIIS IICLRSPDHA AKAIEAGAGD LAVQAMKRFP
401: VAAQMQRNAC NMIRNIAVRS AENRTILLAN GIEKLIRTAK ANNETCRAAA TDALRDLGLD NYNN

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.