CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
plasma membrane 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH36899
KRH43397
KRH53869
KRH59546

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33945.1	KRH36899	AT5G09800.1	21798944
AT4G33945.1	KRH43397	AT5G09800.1	21798944
AT4G33945.1	KRH53869	AT5G09800.1	21798944
AT4G33945.1	KRH59546	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89234	Soybean	cytosol, extracellular	28.76	72.43
VIT_03s0063g01020.t01	Wine grape	cytosol	60.73	61.52
CDX69015	Canola	cytosol	57.51	59.03
CDX75390	Canola	cytosol	57.08	58.59
Bra011480.1-P	Field mustard	cytosol	56.44	57.93
PGSC0003DMT400059061	Potato	cytosol	56.22	56.83
AT4G33945.1	Thale cress	cytosol	56.22	56.47
Solyc11g044870.1.1	Tomato	cytosol	55.79	56.4
GSMUA_Achr3P06810_001	Banana	cytosol	52.58	52.58
TraesCS6D01G293000.1	Wheat	cytosol	49.79	50.77
TraesCS6A01G313600.1	Wheat	cytosol	49.57	50.55
Os02t0761200-01	Rice	cytosol	49.57	49.89
TraesCS6B01G343700.1	Wheat	cytosol	48.93	49.89
KXG31158	Sorghum	cytosol	48.93	49.57
Zm00001d018144_P003	Maize	cytosol	49.36	46.56
HORVU6Hr1G077280.1	Barley	cytosol	49.36	46.37
Zm00001d005332_P001	Maize	cytosol	14.38	31.9

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100527792	MapMan:13.2.5.1.3	EMBL:ACUP02004636	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlantsGene:GLYMA_07G178400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1KL23
InterPro:IPR000225	InterPro:IPR011989	EnsemblPlants:KRH49769	ProteinID:KRH49769	ProteinID:KRH49769.1	PFscan:PS50176
PANTHER:PTHR22895	PANTHER:PTHR22895:SF0	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI00023C7B0F	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:34173660..34177545

Molecular Weight (calculated)

50072.4 Da

IEP (calculated)

7.625

GRAVY (calculated)

0.039

Length

466 amino acids

Sequence
(BLAST)

001: MRTSTTSAWT PPRPSKTQSK PSLSKASISQ VKFFFSSLLP SHSLFLLISK RRRFAGIVTC VPGETNPVIE CLDRLRHLET EPDQNLIAQA FNTLHELCAN
101: PNSDSNSNVA IATKNGAVEL ACSLCSKISL AAGSHVVPLV SALNALSSLL HDVQSTGAFH RCDGPRIVMA FLVDNKGNVE LLSSGFRVVA SAATGDEIVK
201: EAFMELKVDE LILEIMSLHR HKGIQSLYDA VCALLMPDDD RVVASQVYGY ARKFAKIGIA EALVDSLSAG VSSHDLISAC ITLRAVAVND EICKSIAEKG
301: GIDALLRCID DSGEQGDKAV AKVCCSLLSK LAGSDANKSA IVGKGGMDKL IKLSARFADD PSVLQEIMSI ISVLSLRSPD NAARAIEAGA GDLAIQAMEK
401: FPAAHQMQRN SCLMIRNLVV RNPENRTILL NNGIEKYIRK AKQTHTNCKD AATDALRDLG LDNYNL

Best Arabidopsis Sequence Match ( AT4G33945.1 )
(BLAST)

001: MGVRTISQEA FDDLVRENVE DLGMDPSEAL EDALYTLKLQ GVDLFGIITC VPGESSVKDN PVIACLDRLK EFDSVSIDGP LRDEVFDEIS SLFKNLNELC
101: SSQESGNAAI ATKHGAVDLT CSICSKIKIS TRSNRVLVPC FKALAVLIRD IQSTERFRNC TGPNIVVDLL NDSSSDSDLL DAGFAVVAAA ATGNEVVKQL
201: FMELKIDELI LQVLNRESKT TIRALYDAIC ALLTPDDFRV VASQVYGYAR TFAKLGIATA LTEALQAGIG SDSLVSASTA LKAIAVNDEI CKSIAESGGI
301: DTLLRCIDDS GEQGNKTAAK TCCSLLSKLA GSDSNKSTIV EKQGLDKLIT LALRFSDDPL VIQEVMLIIS IICLRSPDHA AKAIEAGAGD LAVQAMKRFP
401: VAAQMQRNAC NMIRNIAVRS AENRTILLAN GIEKLIRTAK ANNETCRAAA TDALRDLGLD NYNN

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.