Factsheet for Zm00001d005332_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016719_P001
Zm00001d025379_P001
Zm00001d038280_P001
Zm00001d050689_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33945.1	Zm00001d016719_P001	AT5G09800.1	21798944
AT4G33945.1	Zm00001d025379_P001	AT5G09800.1	21798944
AT4G33945.1	Zm00001d038280_P001	AT5G09800.1	21798944
AT4G33945.1	Zm00001d050689_P001	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018144_P003	Maize	cytosol	49.05	20.85
CDX75390	Canola	cytosol	38.1	17.62
Bra011480.1-P	Field mustard	cytosol	36.67	16.96
CDX69015	Canola	cytosol	36.67	16.96
AT4G33945.1	Thale cress	cytosol	35.24	15.95
VIT_03s0063g01020.t01	Wine grape	cytosol	33.33	15.22
KRH49769	Soybean	plastid	31.9	14.38
GSMUA_Achr3P06810_001	Banana	cytosol	30.95	13.95
PGSC0003DMT400059061	Potato	cytosol	29.52	13.45
Solyc11g044870.1.1	Tomato	cytosol	29.52	13.45
KRG89234	Soybean	cytosol, extracellular	1.9	2.16

Protein Annotations

EnsemblPlants:Zm00001d005332_P001	EnsemblPlants:Zm00001d005332_T001	EnsemblPlantsGene:Zm00001d005332	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13855
ProteinID:ONM20855.1	SEG:seg	SUPFAM:SSF52058	UniParc:UPI0008444B3F	UniProt:A0A1D6ELU7	MapMan:35.2

Description

ARM repeat superfamily protein

Coordinates

chr2:+:169782346..169785403

Molecular Weight (calculated)

23314.1 Da

IEP (calculated)

5.932

GRAVY (calculated)

-0.008

Length

210 amino acids

Sequence
(BLAST)

001: MVRGNILITH HYELIYTHLQ SPIAKITGHV FQSNKHSAQR DWPGYCFSQA SNNNISRVPD VLVGCSKLSK LDLEGNKLVT LSENMFVSWT MLTELNLDVA
101: STEKFRQSEG PRIVIDLLQG GSENPDLLDA GFSVVAAGSA GNEVVKESFM ELKVNELILR VMKDKSKSNV QSLYDAICVL LKLDDNRVVA SQVYAVENCE
201: IVVQVICHSM

Best Arabidopsis Sequence Match ( AT4G33945.1 )
(BLAST)

001: MGVRTISQEA FDDLVRENVE DLGMDPSEAL EDALYTLKLQ GVDLFGIITC VPGESSVKDN PVIACLDRLK EFDSVSIDGP LRDEVFDEIS SLFKNLNELC
101: SSQESGNAAI ATKHGAVDLT CSICSKIKIS TRSNRVLVPC FKALAVLIRD IQSTERFRNC TGPNIVVDLL NDSSSDSDLL DAGFAVVAAA ATGNEVVKQL
201: FMELKIDELI LQVLNRESKT TIRALYDAIC ALLTPDDFRV VASQVYGYAR TFAKLGIATA LTEALQAGIG SDSLVSASTA LKAIAVNDEI CKSIAESGGI
301: DTLLRCIDDS GEQGNKTAAK TCCSLLSKLA GSDSNKSTIV EKQGLDKLIT LALRFSDDPL VIQEVMLIIS IICLRSPDHA AKAIEAGAGD LAVQAMKRFP
401: VAAQMQRNAC NMIRNIAVRS AENRTILLAN GIEKLIRTAK ANNETCRAAA TDALRDLGLD NYNN

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.