Factsheet for Zm00001d050689_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005332_P001
Zm00001d018144_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	Zm00001d005332_P001	AT4G33945.1	21798944
AT5G09800.1	Zm00001d018144_P003	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016719_P001	Maize	cytosol	89.51	89.51
Os02t0540700-00	Rice	plastid	83.68	71.09
GSMUA_Achr8P30420_001	Banana	mitochondrion	44.06	69.23
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	67.37	65.09
GSMUA_Achr6P18140_001	Banana	cytosol	50.35	52.81
GSMUA_Achr10P...	Banana	plastid	46.62	52.08
Zm00001d019807_P001	Maize	extracellular	9.32	42.55
VIT_04s0044g00870.t01	Wine grape	cytosol	39.86	41.5
KRH53869	Soybean	cytosol	37.06	38.13
VIT_18s0166g00190.t01	Wine grape	plasma membrane	35.43	38.0
KRH43397	Soybean	cytosol	36.36	37.32
KRH59546	Soybean	cytosol	36.13	37.08
PGSC0003DMT400002079	Potato	cytosol	36.13	37.08
Solyc04g071030.1.1	Tomato	cytosol	35.43	35.6
Solyc11g005700.1.1	Tomato	cytosol	34.5	35.24
Zm00001d038280_P001	Maize	cytosol	37.06	35.18
PGSC0003DMT400065698	Potato	cytosol	34.03	34.76
KRH08734	Soybean	mitochondrion	33.33	34.54
CDX84538	Canola	cytosol	33.57	34.37
KRH70331	Soybean	mitochondrion	32.4	34.15
CDY08864	Canola	cytosol	33.33	34.13
Bra024318.1-P	Field mustard	cytosol	33.33	34.13
AT5G09800.1	Thale cress	cytosol	32.4	33.99
KRH36899	Soybean	cytosol	28.67	33.15
AT5G64660.1	Thale cress	cytosol	32.4	33.1
CDX75980	Canola	cytosol	32.63	33.02
CDX92262	Canola	cytosol	31.7	32.93
CDX82332	Canola	cytosol	31.93	32.31
Bra022347.1-P	Field mustard	cytosol	31.7	32.08
Bra001717.1-P	Field mustard	cytosol	31.47	31.84
CDX99325	Canola	cytosol	31.0	31.44
AT3G18710.1	Thale cress	cytosol	30.07	31.08
Bra037568.1-P	Field mustard	cytosol	28.9	30.02
Zm00001d016764_P001	Maize	extracellular	29.14	29.9
CDY71041	Canola	cytosol	28.67	29.78
Zm00001d003624_P001	Maize	cytosol	26.81	28.75
Zm00001d050712_P001	Maize	extracellular, plastid	27.27	28.61
Zm00001d042738_P001	Maize	cytosol	27.04	28.43
Zm00001d028294_P001	Maize	cytosol	29.84	27.89
Zm00001d048008_P001	Maize	cytosol	30.07	27.86
Zm00001d044734_P001	Maize	mitochondrion	28.44	27.6
Zm00001d026040_P001	Maize	cytosol	25.64	26.89
Zm00001d002498_P001	Maize	cytosol	25.17	26.02
Zm00001d028374_P001	Maize	mitochondrion	26.57	25.5
Zm00001d016730_P001	Maize	cytosol	25.87	25.46
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	23.08	25.26
Zm00001d017976_P001	Maize	mitochondrion	26.11	24.78
Zm00001d017671_P001	Maize	cytosol	24.48	24.71
Zm00001d003745_P001	Maize	nucleus	25.17	24.11
Zm00001d030251_P001	Maize	cytosol	24.71	23.87
Zm00001d000044_P001	Maize	cytosol	11.65	21.64
Zm00001d023480_P001	Maize	cytosol	22.84	17.53

Protein Annotations

EntrezGene:103653608	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:AQK52920.1	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083
UniProt:K7UVS5	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF12	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002217227	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d050689	EnsemblPlants:Zm00001d050689_P001
EnsemblPlants:Zm00001d050689_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

U-box domain-containing protein 29

Coordinates

chr4:+:115493076..115494365

Molecular Weight (calculated)

44291.5 Da

IEP (calculated)

8.296

GRAVY (calculated)

0.216

Length

429 amino acids

Sequence
(BLAST)

001: MNGRLSAEYR GLEVKVPNLF RCPISLDVMH SPVSLCTGVT YERASIQRWL DSGNTTCPAT MLTLPSTDLV PNLTLRRLIA LWASTAAPSS SSPAASAVGP
101: TPAAAAAELL RRIADPGADP CPPLRKLAAF LSDDDVDEFD KNALARAGGA AETVAFVLRR ADREAAEAAV RVLAAIAASD CIEEESKRRV AAALAADAPS
201: AAASLARVLR SGTSLEARVD AARLVESLLR NAAPGARAAV AESEDLVREL VRLVGPADEK KGSLDGQAVA AGMSCLAAVA ATRRARAAMV RLGAVAAAVR
301: VLEADAGPPG QALRVLEATV GCAEGRAAVC ESALSVVPAV VSKMMKAGVG GAEAAVSVLW AVCHRYRDRR AVEAAAACEG GLTKLLLLMQ SGCSAAARQM
401: ASELLKIFRV NGKSCVAGYD SKTSHIMPF

Best Arabidopsis Sequence Match ( AT5G64660.1 )
(BLAST)

001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF

Arabidopsis Description

PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.