Factsheet for Zm00001d016719_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005332_P001
Zm00001d018144_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	Zm00001d005332_P001	AT4G33945.1	21798944
AT5G09800.1	Zm00001d018144_P003	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050689_P001	Maize	cytosol	89.51	89.51
EES05205	Sorghum	cytosol	90.91	86.09
Os02t0540700-00	Rice	plastid	83.68	71.09
GSMUA_Achr8P30420_001	Banana	mitochondrion	43.82	68.86
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	68.53	66.22
GSMUA_Achr6P18140_001	Banana	cytosol	51.05	53.55
GSMUA_Achr10P...	Banana	plastid	46.39	51.82
Zm00001d019807_P001	Maize	extracellular	9.32	42.55
VIT_04s0044g00870.t01	Wine grape	cytosol	39.39	41.02
KRH53869	Soybean	cytosol	37.53	38.61
VIT_18s0166g00190.t01	Wine grape	plasma membrane	35.66	38.25
PGSC0003DMT400002079	Potato	cytosol	37.06	38.04
KRH59546	Soybean	cytosol	36.13	37.08
KRH43397	Soybean	cytosol	36.13	37.08
Solyc04g071030.1.1	Tomato	cytosol	35.66	35.83
KRH08734	Soybean	mitochondrion	34.27	35.51
CDX84538	Canola	cytosol	34.5	35.32
CDY08864	Canola	cytosol	34.27	35.08
Bra024318.1-P	Field mustard	cytosol	34.27	35.08
Solyc11g005700.1.1	Tomato	cytosol	34.27	35.0
Zm00001d038280_P001	Maize	cytosol	36.6	34.73
PGSC0003DMT400065698	Potato	cytosol	33.8	34.52
AT5G09800.1	Thale cress	cytosol	32.87	34.47
CDX75980	Canola	cytosol	34.03	34.43
CDX92262	Canola	cytosol	33.1	34.38
KRH70331	Soybean	mitochondrion	32.4	34.15
AT5G64660.1	Thale cress	cytosol	33.33	34.05
Bra022347.1-P	Field mustard	cytosol	33.33	33.73
CDX82332	Canola	cytosol	33.1	33.49
KRH36899	Soybean	cytosol	28.67	33.15
Bra001717.1-P	Field mustard	cytosol	32.63	33.02
CDX99325	Canola	cytosol	32.4	32.86
AT3G18710.1	Thale cress	cytosol	31.0	32.05
Bra037568.1-P	Field mustard	cytosol	30.54	31.72
CDY71041	Canola	cytosol	30.07	31.23
Zm00001d042738_P001	Maize	cytosol	28.44	29.9
Zm00001d028294_P001	Maize	cytosol	31.7	29.63
Zm00001d048008_P001	Maize	cytosol	31.7	29.37
Zm00001d003624_P001	Maize	cytosol	26.57	28.5
Zm00001d016764_P001	Maize	extracellular	27.74	28.47
Zm00001d044734_P001	Maize	mitochondrion	28.44	27.6
Zm00001d050712_P001	Maize	extracellular, plastid	26.11	27.38
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	24.01	26.28
Zm00001d016730_P001	Maize	cytosol	26.34	25.92
Zm00001d026040_P001	Maize	cytosol	24.48	25.67
Zm00001d002498_P001	Maize	cytosol	24.48	25.3
Zm00001d017976_P001	Maize	mitochondrion	26.57	25.22
Zm00001d017671_P001	Maize	cytosol	24.71	24.94
Zm00001d028374_P001	Maize	mitochondrion	25.41	24.38
Zm00001d003745_P001	Maize	nucleus	25.17	24.11
Zm00001d030251_P001	Maize	cytosol	24.94	24.1
Zm00001d000044_P001	Maize	cytosol	11.89	22.08
Zm00001d023480_P001	Maize	cytosol	23.31	17.89

Protein Annotations

EntrezGene:100280896	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	ProteinID:AQK71544.1	InterPro:ARM-type_fold	EMBL:BT083832
UniProt:C4IZ35	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR003613	InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF12
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0001A4BFB5	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d016719
EnsemblPlants:Zm00001d016719_P001	EnsemblPlants:Zm00001d016719_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

U-box domain-containing protein 29

Coordinates

chr5:+:174012992..174014281

Molecular Weight (calculated)

44352.5 Da

IEP (calculated)

8.294

GRAVY (calculated)

0.190

Length

429 amino acids

Sequence
(BLAST)

001: MNTRLSAEYQ GLEVKVPSLF RCPISLDVMR SPVSLCTGVT YERASIQRWL DSGNTTCPAT MLSLPSTDLV PNLTLRRLIA LWASTAAPSS PSSSSSPAVG
101: PTPAAAAAEL LRRVADPAAD PCPPLRKLAA FLSDDDVDEF DKNALARAGG AAETVASVLR RAGREPAEAA VRVLAAIAAS DCIEEESKRR VAAALAADAP
201: STAAALARVL RSATSLEARV DAARLVESLL RNAAPGARAT VADSEELLGE LIRLVGPADD KGGLDRQAVA AGLSCLAAIA ATRRARAEMV RLGAVPAAVR
301: ILEADAGSPS QALRVLEAAV GCAEGRAAVC ESAGSAVPVV VSKMMKGGMA GAEAAVSVLW AVCHRYRDRR AVAAAAACES GLTKLLLLMQ SGCSPAVRQM
401: TSELLKIFRV NGKSCVAGYD SKTSHIMPF

Best Arabidopsis Sequence Match ( AT5G64660.1 )
(BLAST)

001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF

Arabidopsis Description

PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.