Factsheet for Zm00001d002498_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11341	Sorghum	cytosol	92.05	92.72
Zm00001d026040_P001	Maize	cytosol	89.64	90.95
TraesCS2A01G450300.1	Wheat	cytosol	76.39	76.02
Os04t0589700-01	Rice	cytosol	77.11	76.01
TraesCS2D01G449900.1	Wheat	cytosol	75.9	75.36
TraesCS2B01G471900.1	Wheat	cytosol	75.9	75.36
Zm00001d017671_P001	Maize	cytosol	65.54	64.0
GSMUA_Achr3P18060_001	Banana	cytosol	47.95	52.23
PGSC0003DMT400004594	Potato	cytosol	41.2	42.01
GSMUA_Achr5P13860_001	Banana	cytosol	30.36	41.58
Solyc01g080920.2.1	Tomato	cytosol	40.96	41.56
Zm00001d019807_P001	Maize	extracellular	8.43	37.23
Zm00001d042738_P001	Maize	cytosol	32.53	33.09
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	29.88	31.63
Zm00001d016730_P001	Maize	cytosol	30.12	28.67
Zm00001d003745_P001	Maize	nucleus	30.12	27.9
Zm00001d050712_P001	Maize	extracellular, plastid	26.02	26.41
Zm00001d044734_P001	Maize	mitochondrion	27.47	25.79
Zm00001d017976_P001	Maize	mitochondrion	27.95	25.66
Zm00001d028374_P001	Maize	mitochondrion	27.47	25.5
Zm00001d050689_P001	Maize	cytosol	26.02	25.17
Zm00001d016764_P001	Maize	extracellular	25.3	25.12
Zm00001d003624_P001	Maize	cytosol	23.61	24.5
Zm00001d016719_P001	Maize	cytosol	25.3	24.48
Zm00001d048008_P001	Maize	cytosol	26.51	23.76
Zm00001d028294_P001	Maize	cytosol	26.27	23.75
Zm00001d030251_P001	Maize	cytosol	25.3	23.65
Zm00001d038280_P001	Maize	cytosol	25.06	23.01
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	23.86	22.3
Zm00001d023480_P001	Maize	cytosol	28.92	21.47
Zm00001d000044_P001	Maize	cytosol	10.36	18.61

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:103646011	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6E1J9	InterPro:ARM-like
InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0016874
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	ProteinID:ONM14548.1	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF23	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000220F549	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d002498	EnsemblPlants:Zm00001d002498_P001	EnsemblPlants:Zm00001d002498_T001	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

E3 ubiquitin-protein ligase PUB23

Coordinates

chr2:-:14080929..14082176

Molecular Weight (calculated)

45089.0 Da

IEP (calculated)

7.813

GRAVY (calculated)

0.166

Length

415 amino acids

Sequence
(BLAST)

001: MAMEEPPQLF LCPISMELME DPVTVLTGVT YDRSSIERWF FKYGKATCPA TMQRLNSFDL TPNHTLKRVI STWLDHASSP SSSSSSTPLC NKLEREKLPS
101: VFASIEATPF KVTALKNLRR CMDGDVAAQK DFVAYGGIQV LGRVMTQALA ESCAGGDFSS FRTCEEAGAV LATLPLSDDA SVELVLKPEC MKPVVAVLQR
201: GSAESRLHAM AILAKISRAI GADRDWTPGV DVDDLVKSLL ELLSDGASAK LSYRALDVLL DVTARSRGAR RAKAVEVGAV CVLVELLPDA ERRIAERALL
301: LLKRLCKCPE GRLAFVEHAL AVSAVAQTLL RVSRLASGLA VSVLWLVACA VTPAERVLDD MLMSGGVAKL LALLQVENSA STKEKAAKLL SVHGAFWRQY
401: PCFPTDLRDY LKFLN

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.