CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026040_P001	Maize	cytosol	91.75	92.42
Zm00001d002498_P001	Maize	cytosol	92.72	92.05
TraesCS2A01G450300.1	Wheat	cytosol	79.61	78.66
TraesCS2B01G471900.1	Wheat	cytosol	79.61	78.47
TraesCS2D01G449900.1	Wheat	cytosol	79.13	77.99
Os04t0589700-01	Rice	cytosol	79.13	77.43
EES07426	Sorghum	cytosol	67.48	64.8
OQU80253	Sorghum	mitochondrion	30.1	56.88
OQU81292	Sorghum	mitochondrion	28.4	54.42
GSMUA_Achr3P18060_001	Banana	cytosol	48.54	52.49
PGSC0003DMT400004594	Potato	cytosol	41.99	42.51
GSMUA_Achr5P13860_001	Banana	cytosol	31.07	42.24
Solyc01g080920.2.1	Tomato	cytosol	41.75	42.05
EES03937	Sorghum	plastid	32.52	32.84
EES13136	Sorghum	cytosol	32.28	31.22
EES06927	Sorghum	cytosol	31.55	30.66
OQU85086	Sorghum	cytosol	30.83	29.74
KXG23010	Sorghum	cytosol	32.28	29.3
KXG26241	Sorghum	cytosol	29.85	26.62
EES06938	Sorghum	extracellular	25.49	25.8
EER92576	Sorghum	mitochondrion	28.16	25.55
EES05563	Sorghum	mitochondrion	28.4	25.32
KXG19704	Sorghum	mitochondrion	27.91	25.05
OQU81614	Sorghum	cytosol	24.03	24.87
EES05205	Sorghum	cytosol	26.94	24.5
KXG38738	Sorghum	plastid	27.91	23.28
EER95229	Sorghum	cytosol	25.73	23.09
KXG22102	Sorghum	mitochondrion	25.24	22.76
OQU81548	Sorghum	mitochondrion	24.27	22.37

Protein Annotations

Gene3D:1.25.10.10	Gene3D:1.25.10.110	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8060462	InterPro:ARM-like
InterPro:ARM-type_fold	UniProt:C5YEY9	EnsemblPlants:EES11341	ProteinID:EES11341	ProteinID:EES11341.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF23	SMART:SM00504
EnsemblPlantsGene:SORBI_3006G196400	SUPFAM:SSF48371	SUPFAM:SSF57850	unigene:Sbi.8614	UniParc:UPI0001A86DF6	InterPro:Ubox_domain
RefSeq:XP_002447013.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:54919919..54921554

Molecular Weight (calculated)

44712.5 Da

IEP (calculated)

8.153

GRAVY (calculated)

0.148

Length

412 amino acids

Sequence
(BLAST)

001: MAMEEPPQLF LCPISMELME DPVTVSTGVT YDRRSIERWF FKYGKTTCPA TMQRLNSFDL TPNHTLKRVI STWLDRASSS SSSTPLCTKL AREKLPSVLA
101: GIEATPFKVT ALKNLRRCMD EDVAAQQDFV AYGGIQVLGR VMTQALAESC AGVDFSAFRT CEEAGAVLAT LPLSDDASVE LVLKPECMKP VVAVVQRGSA
201: DSRLHAMAIL AKISGASGAD RDWTPGVDVD DLVKSLLELL SDGASAKLSS RALDVLLDVT ARSRGARRAK AVEVGAVCVL VELLPDADRR VAERALLLLK
301: RLCKCPEGRL AFAEHALAVS AVARTMLRVS VLASRLAVSV LWLVACSATP AERVLDDMLV SGGVGKLLAL LQVENSASTK EKAAKLLRVH GPFWRQYPCF
401: PTDLRDYLKF LN

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.